diff options
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 6 |
1 files changed, 5 insertions, 1 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index c833e6a..c2a2e09 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -1713,11 +1713,14 @@ dictionaries to record a queryable version of the graph.") (("\".*libsdsl\\.a\"") "\"-lsdsl\"") (("\".*libdivsufsort\\.a\"") "\"-ldivsufsort\"") (("\".*libdivsufsort64\\.a\"") "\"-ldivsufsort64\"") + (("\".*libodgi\\.a\"") "\"-lodgi\"") (("\\$\\{sdsl-lite_INCLUDE\\}") (search-input-directory inputs "/include/sdsl")) (("\\$\\{sdsl-lite-divsufsort_INCLUDE\\}") (dirname - (search-input-file inputs "/include/divsufsort.h")))))) + (search-input-file inputs "/include/divsufsort.h"))) + (("\\$\\{odgi_INCLUDE\\}") + (search-input-directory inputs "/include/odgi"))))) (add-before 'build 'build-abPOA (lambda* (#:key make-flags #:allow-other-keys) ;; This helps with portability to other architectures. @@ -1729,6 +1732,7 @@ dictionaries to record a queryable version of the graph.") (inputs (list jemalloc libdivsufsort + odgi openmpi pybind11 python |