diff options
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 8 |
1 files changed, 3 insertions, 5 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 05ffb99..702f3e6 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -2425,7 +2425,7 @@ cases include: (for-each (lambda (file) (wrap-script file - `("PYTHONPATH" ":" prefix (,(getenv "PYTHONPATH"))) + `("GUIX_PYTHONPATH" ":" prefix (,(getenv "GUIX_PYTHONPATH"))) `("PATH" ":" prefix (,(string-append bcftools "/bin") ,(string-append samtools "/bin"))))) (find-files (string-append out "/bin") "\\.py$")) @@ -2439,10 +2439,8 @@ cases include: ("python" ,python-2) ("python2-bx-python" ,python2-bx-python) ("python2-numpy" ,python2-numpy) - - ;; TODO: re-package these! - ;("python2-pandas" ,python2-pandas) - ;("python2-pysam" ,python2-pysam) + ("python2-pandas" ,python2-pandas) + ("python2-pysam" ,(python2-package python-pysam)) ("python2-scipy" ,python2-scipy) ("rtg-tools" ,rtg-tools) ("samtools" ,samtools) |