diff options
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 24 |
1 files changed, 15 insertions, 9 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 2bdf47a..dd7e77e 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -49,27 +49,28 @@ #:use-module (srfi srfi-1)) (define-public r-wgcna - (let ((commit "9c68667c3")) + (let ((commit "41b24edb522a200b671e8e25f6ffb67769113a49")) (package (name "r-wgcna") (version (string-append "1.49-" commit)) (source (origin (method git-fetch) (uri (git-reference - (url "https://github.com/genenetwork/WGCNA.git") + ;; (url "https://github.com/genenetwork/WGCNA.git") + (url "https://github.com/pjotrp/WGCNA.git") (commit commit))) (file-name (string-append name "-" commit)) (sha256 (base32 - "0cv824wkdml9h9imsc30s2x3l8g65j44cpjbr1ydkk49g5qmf581")))) + "1ad2lgdz8dy8imn4my83jz4xqp4m3phyakfssmdjcp362g739p2w")))) (properties `((upstream-name . "WGCNA"))) (build-system r-build-system) (propagated-inputs `( ;; ("r-annotationdbi" ,r-annotationdbi) ; ("r-biocparallel" ,r-biocparallel) - ; ("r-dynamictreecut" ,r-dynamictreecut) - ; ("r-fastcluster" ,r-fastcluster) - ; ("r-foreach" ,r-foreach) + ("r-dynamictreecut" ,r-dynamictreecut) + ("r-fastcluster" ,r-fastcluster) + ("r-foreach" ,r-foreach) ; ("r-go-db" ,r-go-db) ; ("r-grdevices" ,r-grdevices) ; ("r-hmisc" ,r-hmisc) @@ -85,9 +86,14 @@ (home-page "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/") (synopsis - "Weighted Correlation Network Analysis") + "Weighted gene correlation network analysis (wgcna)") (description - "Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.") + "Functions necessary to perform Weighted Correlation Network +Analysis on high-dimensional data. Includes functions for rudimentary +data cleaning, construction of correlation networks, module +identification, summarization, and relating of variables and modules +to sample traits. Also includes a number of utility functions for +data manipulation and visualization.") (license license:gpl2+)))) (define-public qtlreaper @@ -123,7 +129,7 @@ test. For the permutation test, it performs only as many permutations as are necessary to define the empirical P-value to a reasonable precision. It also performs bootstrap resampling to estimate the confidence region for the location of a putative QTL.") - (license license:gpl2))) + (license license:gpl2+))) (define-public plink2 (package |