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-rw-r--r--gn/packages/bioinformatics.scm24
1 files changed, 15 insertions, 9 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 2bdf47a..dd7e77e 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -49,27 +49,28 @@
#:use-module (srfi srfi-1))
(define-public r-wgcna
- (let ((commit "9c68667c3"))
+ (let ((commit "41b24edb522a200b671e8e25f6ffb67769113a49"))
(package
(name "r-wgcna")
(version (string-append "1.49-" commit))
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/genenetwork/WGCNA.git")
+ ;; (url "https://github.com/genenetwork/WGCNA.git")
+ (url "https://github.com/pjotrp/WGCNA.git")
(commit commit)))
(file-name (string-append name "-" commit))
(sha256
(base32
- "0cv824wkdml9h9imsc30s2x3l8g65j44cpjbr1ydkk49g5qmf581"))))
+ "1ad2lgdz8dy8imn4my83jz4xqp4m3phyakfssmdjcp362g739p2w"))))
(properties `((upstream-name . "WGCNA")))
(build-system r-build-system)
(propagated-inputs
`( ;; ("r-annotationdbi" ,r-annotationdbi)
; ("r-biocparallel" ,r-biocparallel)
- ; ("r-dynamictreecut" ,r-dynamictreecut)
- ; ("r-fastcluster" ,r-fastcluster)
- ; ("r-foreach" ,r-foreach)
+ ("r-dynamictreecut" ,r-dynamictreecut)
+ ("r-fastcluster" ,r-fastcluster)
+ ("r-foreach" ,r-foreach)
; ("r-go-db" ,r-go-db)
; ("r-grdevices" ,r-grdevices)
; ("r-hmisc" ,r-hmisc)
@@ -85,9 +86,14 @@
(home-page
"http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/")
(synopsis
- "Weighted Correlation Network Analysis")
+ "Weighted gene correlation network analysis (wgcna)")
(description
- "Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.")
+ "Functions necessary to perform Weighted Correlation Network
+Analysis on high-dimensional data. Includes functions for rudimentary
+data cleaning, construction of correlation networks, module
+identification, summarization, and relating of variables and modules
+to sample traits. Also includes a number of utility functions for
+data manipulation and visualization.")
(license license:gpl2+))))
(define-public qtlreaper
@@ -123,7 +129,7 @@ test. For the permutation test, it performs only as many permutations
as are necessary to define the empirical P-value to a reasonable
precision. It also performs bootstrap resampling to estimate the
confidence region for the location of a putative QTL.")
- (license license:gpl2)))
+ (license license:gpl2+)))
(define-public plink2
(package