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-rw-r--r--README.md35
1 files changed, 8 insertions, 27 deletions
diff --git a/README.md b/README.md
index 42712a0..1132850 100644
--- a/README.md
+++ b/README.md
@@ -5,24 +5,26 @@ http://genenetwork.org/. See
[Guix Notes](https://github.com/pjotrp/guix-notes/blob/master/HACKING.org)
for installing and hacking GNU Guix.
-To easily use the packages from this repo, simply add it to your `channels` list:
+To easily use the packages from this repo, simply add it to your
+`channels` list in ~/.config/guix/channels.scm as described
+[here](https://guix.gnu.org/manual/en/html_node/Channels.html)
(cons*
(channel
(name 'gn-bioinformatics)
- (url "https://gitlab.com/genenetwork/guix-bioinformatics")
+ (url "https://git.genenetwork.org/pjotrp/guix-bioinformatics.git")
(branch "master"))
%default-channels)
-and run `guix pull` like normal to update your software. This is the recommended
-way to use the software from this repository and the code snippets in this
-README assume you have done so.
+and run `guix pull` like normal to update your software. This is the
+recommended way to use the software from this repository and the code
+snippets in this README assume you have done so.
If you want to make changes to the packages in this repo then simply set
the GUIX_PACKAGE_PATH to point to the root of this directory
before running Guix. E.g.
- git clone https://github.com/genenetwork/guix-bioinformatics.git
+ git clone https://git.genenetwork.org/pjotrp/guix-bioinformatics.git
export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/
guix package -A cwl
@@ -71,27 +73,6 @@ Install the common workflow language tool cwltool with
cwtool --version
1.0.20150916041152
-# Packages moved from here to main line GNU Guix
-
-## LLVM D compiler
-
-The LLVM D compiler was added to GNU Guix main stream!
-
- guix package -i ldc
-
-## Elixir and Erlang
-
-Both languages have gone in to main line Guix:
-
- guix package -i elixir
- guix package -i erlang
-
-## R/qtl
-
-R-qtl is now part of main stream GNU Guix:
-
- guix package -i r-qtl r
-
# Development tips
## Override individual packages