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Diffstat (limited to 'README.md')
| -rw-r--r-- | README.md | 35 |
1 files changed, 8 insertions, 27 deletions
@@ -5,24 +5,26 @@ http://genenetwork.org/. See [Guix Notes](https://github.com/pjotrp/guix-notes/blob/master/HACKING.org) for installing and hacking GNU Guix. -To easily use the packages from this repo, simply add it to your `channels` list: +To easily use the packages from this repo, simply add it to your +`channels` list in ~/.config/guix/channels.scm as described +[here](https://guix.gnu.org/manual/en/html_node/Channels.html) (cons* (channel (name 'gn-bioinformatics) - (url "https://gitlab.com/genenetwork/guix-bioinformatics") + (url "https://git.genenetwork.org/pjotrp/guix-bioinformatics.git") (branch "master")) %default-channels) -and run `guix pull` like normal to update your software. This is the recommended -way to use the software from this repository and the code snippets in this -README assume you have done so. +and run `guix pull` like normal to update your software. This is the +recommended way to use the software from this repository and the code +snippets in this README assume you have done so. If you want to make changes to the packages in this repo then simply set the GUIX_PACKAGE_PATH to point to the root of this directory before running Guix. E.g. - git clone https://github.com/genenetwork/guix-bioinformatics.git + git clone https://git.genenetwork.org/pjotrp/guix-bioinformatics.git export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/ guix package -A cwl @@ -71,27 +73,6 @@ Install the common workflow language tool cwltool with cwtool --version 1.0.20150916041152 -# Packages moved from here to main line GNU Guix - -## LLVM D compiler - -The LLVM D compiler was added to GNU Guix main stream! - - guix package -i ldc - -## Elixir and Erlang - -Both languages have gone in to main line Guix: - - guix package -i elixir - guix package -i erlang - -## R/qtl - -R-qtl is now part of main stream GNU Guix: - - guix package -i r-qtl r - # Development tips ## Override individual packages |