diff options
| -rw-r--r-- | gn/packages/gemma.scm | 11 |
1 files changed, 9 insertions, 2 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm index ce486e6..9b44759 100644 --- a/gn/packages/gemma.scm +++ b/gn/packages/gemma.scm @@ -19,6 +19,7 @@ #:use-module (gnu packages maths) #:use-module (gnu packages parallel) #:use-module (gnu packages perl) + #:use-module (gnu packages textutils) #:use-module (gnu packages time) #:use-module (gnu packages web) #:use-module (gnu packages ruby-check) @@ -140,8 +141,14 @@ genome-wide association studies (GWAS).") (native-inputs (list ruby-rake)) (inputs (list gemma-gn2)) (propagated-inputs - (list parallel ;; bin/gemma-wrapper shells out to GNU parallel - coreutils)) ;; uses cat + ;; bin/gemma-wrapper shells out to all of these; propagate + ;; them so `guix shell gemma-wrapper` is a complete runtime. + (list parallel ;; orchestrates per-chromosome and permutation jobs + coreutils ;; uses cat, env, rm + tar ;; archives GEMMA's per-run outputs as .tar.xz + xz ;; tar -J needs xz on PATH + time ;; bin/gemma-wrapper invokes `time -v gemma ...` + pfff)) ;; fast file fingerprint for inputs >100KB (arguments (list #:phases |