diff options
| -rw-r--r-- | gn/packages/bioinformatics.scm | 50 |
1 files changed, 24 insertions, 26 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index b58d97e..48f1c40 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -1792,8 +1792,8 @@ suitable for long reads, but works also well with short reads.") (license license:expat))) (define-public bh20-seq-resource - (let ((commit "ae4cb3c2cf7103bbc84f52618bb755d7ce25775b") - (revision "3")) + (let ((commit "2ae71911cd87ce4f2eabdff21e538267b3270d45") + (revision "4")) (package (name "bh20-seq-resource") (version (git-version "1.0" revision commit)) @@ -1804,36 +1804,34 @@ suitable for long reads, but works also well with short reads.") (commit commit))) (file-name (git-file-name name version)) (sha256 - (base32 "1k0gsz4yc8l5znanzd094g2jp40ksbpa9667zr31ayrjx6labz02")) + (base32 "1k6cc88hrcm77jwpdk2084q0zirv2vlbz3c07nmpbhk1lhqk5x0n")) (modules '((guix build utils))) (snippet '(begin - (substitute* "setup.py" - (("py-dateutil") "python-dateutil")) - #t)))) + (delete-file "gittaggers.py"))))) (build-system python-build-system) + (arguments + (list + #:tests? #f)) ; Tests can't find pytest (propagated-inputs - `(("python-arvados-python-client" ,python-arvados-python-client) - ("python-dateutil" ,python-dateutil) - ("python-flask" ,python-flask) - ("python-magic" ,python-magic) - ("python-pyyaml" ,python-pyyaml) - ("python-pycurl" ,python-pycurl) - ("python-pyshex" ,python-pyshex) - ("python-redis" ,python-redis) - ("python-ruaml.yaml" ,python38-ruaml.yaml-0.15.76) - ("clustalw" ,clustalw) - ("python-schema-salad" ,python-schema-salad) - ("python-twint" ,python-twint) - ;; and for the service - ("python" ,python) - ("gunicorn" ,gunicorn))) + (list python-arvados-python-client + python-schema-salad + python-magic + python-pyshex + python-pyshexc-0.7 + python-py-dateutil + + ;; for the web + python-flask + python-pyyaml + python-redis + + ;; and for the service + python + gunicorn)) (native-inputs - `(("git" ,(@ (gnu packages version-control) git)) - ("python-oauth2client" ,python-oauth2client) - ("python-pytest" ,python-pytest-4) - ("python-pytest-runner" ,python-pytest-runner-2) - ("python-uritemplate" ,python-uritemplate))) + (list python-pytest-4 ; < 6 + python-pytest-runner-4)) ; < 5 (home-page "https://github.com/pubseq/bh20-seq-resource") (synopsis "Tool to upload SARS-CoV-19 sequences and service to kick off analysis") |