diff options
| -rw-r--r-- | README.md | 4 | ||||
| -rw-r--r-- | gn/packages/OpenFYBA | 59 | ||||
| -rw-r--r-- | gn/packages/arrayfire.scm | 184 |
3 files changed, 245 insertions, 2 deletions
diff --git a/README.md b/README.md index 6d8bd0e..a13e0b1 100644 --- a/README.md +++ b/README.md @@ -32,7 +32,7 @@ Install slurm with ## Module system -Install the module envirmonment with +Install the module environment with git clone https://github.com/genenetwork/guix-bioinformatics.git export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/ @@ -44,7 +44,7 @@ Install the module envirmonment with ## python2-numarray 1.5.2 -Install the module envirmonment with +Install the module environment with git clone https://github.com/genenetwork/guix-bioinformatics.git export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/ diff --git a/gn/packages/OpenFYBA b/gn/packages/OpenFYBA new file mode 100644 index 0000000..5d64381 --- /dev/null +++ b/gn/packages/OpenFYBA @@ -0,0 +1,59 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2016 Dennis Mungai <dmngaie@gmail.com> +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. + +(define-module (gnu packages OpenFYBA) + #:use-module ((guix licenses) #:prefix license:) + #:use-module (gnu packages) + #:use-module (guix packages) + #:use-module (guix download) + #:use-module (guix build-system gnu) + #:use-module (gnu packages linux) + #:use-module (gnu packages textutils) + #:use-module (gnu packages base) + #:use-module (gnu packages tls) + #:use-module (gnu packages zip) + #:use-module (gnu packages bootstrap) + #:use-module (guix git-download)) + +(define-public OpenFYBA + (package + (name "OpenFYBA") + (version "4.4.1") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/kartverket/fyba/archive" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0ya1agi78d386skq353dk400fl11q6whfqmv31qrkn4g5vamixlr")))) + (inputs `(("openssl" ,openssl) + (build-system gnu-build-system) + (home-page "http://labs.kartverket.no/sos/") + (synopsis "source code release of the FYBA library") + (description + "OpenFYBA is the source code release of the FYBA library, distributed by the +National Mapping Authority of Norway (Statens kartverk) to read and write +files in the National geodata standard format SOSI. +The original library has a long history, and was originally developed for +systems as diverse as DOS, OS/2-16, OS/2-32, Win16, Win32, and various UNIX +variants (POSIX, HPUX, Silicon graphics). In Norwegian. It shows in the +source code. OpenFYBA has been tested to run at least on Windows and Linux +environments. ") + (license license:gpl2+))) + diff --git a/gn/packages/arrayfire.scm b/gn/packages/arrayfire.scm new file mode 100644 index 0000000..1d3401d --- /dev/null +++ b/gn/packages/arrayfire.scm @@ -0,0 +1,184 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2016 Dennis Mungai <dmngaie@gmail.com> +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. + +(define-module (gnu packages arrayfire) + #:use-module (guix packages) + #:use-module (guix download) + #:use-module (guix build-system gnu) + #:use-module (guix cmake-build-system) + #:use-module (guix licenses) + #:use-module (gnu packages autotools) + #:use-module (gnu packages curl) + #:use-module (gnu packages gawk) + #:use-module (gnu packages cmake) + #:use-module (gnu packages boost) + #:use-module (gnu packages glib) + #:use-module (gnu packages image) + #:use-module (gnu packages video) + #:use-module (gnu packages tls) + #:use-module (gnu packages textutils) + #:use-module (gnu packages fftw) + #:use-module (gnu packages fftw-openmpi) + #:use-module (gnu packages fftwf) + #:use-module (gnu packages gl) + #:use-module (gnu packages glew) + #:use-module (gnu packages pkg-config) + #:use-module (gnu packages mesa) + #:use-module (gnu packages web) + #:use-module (gnu packages linux)) + +(define-public arrayfire + (package + (name "arrayfire") + (version "v3.3.alpha") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/arrayfire/arrayfire/archive/" version + ".tar.gz")) + (sha256 + (base32 + "0rla0mi5wby8bkpzrj063y6js3d4dlfl3qwfvm8m8skfc21dz52p")))) + (build-system cmake-build-system) + (arguments `(#:configure-flags '("-DCMAKE_BUILD_TYPE=Release -DBUILD_OPENCL=ON"))) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake) + ("cmake" ,cmake) + ("doxygen" ,doxygen) + ("gawk" ,gawk) + ("gettext" ,gnu-gettext) + ("icedtea7" ,icedtea7) + ("libtool" ,libtool) + ("pkg-config" ,pkg-config) + ("swig" ,swig) + ("which" ,which) + ("yasm" ,yasm))) + (inputs + `(("boost" ,boost) + ("bzip2" ,bzip2) + ("glfw" ,glfw) + ("curl" ,curl) + ("dbus" ,dbus) + ("enca" ,enca) + ("eudev" ,eudev) + ("fontconfig" ,fontconfig) + ("freetype" ,freetype) + ("fribidi" ,fribidi) + ("glew" ,glew) + ("gnutls" ,gnutls) + ("gperf" ,gperf) + ("libcap" ,libcap) + ("libgcrypt" ,libgcrypt) + ("libjpeg" ,libjpeg) + ("libltdl" ,libltdl) + ("libssh" ,libssh) + ("libtiff" ,libtiff) + ("libxml2" ,libxml2) + ("libxmu" ,libxmu) + ("libxrandr" ,libxrandr) + ("libxrender" ,libxrender) + ("libxslt" ,libxslt) + ("libxt" ,libxt) + ("libyajl" ,libyajl) + ("lzo" ,lzo) + ("mesa-utils" ,mesa-utils) + ("mysql" ,mysql) + ("openssl" ,openssl) + ("pcre" ,pcre) + ("python" ,python-2) + ("tinyxml" ,tinyxml) + ("unzip" ,unzip) + ("zip" ,zip) + ("freeimage" ,freeimage) + ("fftw" ,fftw) + ("fftwf" ,fftwf) + ("fftw-openmpi" ,fftw-openmpi) + ("atlas" ,atlas) + ("gfortran", gfortran) + ("glew" ,glew) + ("glu" ,glu) + ("libx11" ,libx11) + ("libxi" ,libxi) + ("libxrandr" ,libxrandr) + ("libxxf86vm" ,libxxf86vm) + ("inputproto" ,inputproto) + ("glproto" ,glproto) + ("zlib" ,zlib))) + (synopsis "ArrayFire: a general purpose GPU library. https://arrayfire.com") + (description "ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming simple.") + (home-page "http://arrayfire.com/") + (license gpl3+))) + +(define-public glfw + (package + (name "glfw") + (version "3.0.4") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/glfw/glfw/archive/" + version ".zip")) + (file-name (string-append name "-" version ".zip")) + (sha256 + (base32 + "1g0jm80cakk60477zz9z1mpsznxaadsfm318yiigf6kackrkqfqg")))) + (arguments `(#:configure-flags '("-DBUILD_SHARED_LIBS=ON"))) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake) + ("cmake" ,cmake) + ("libtool" ,libtool) + ("pkg-config" ,pkg-config))) + (inputs + `(("bzip2" ,bzip2) + ("curl" ,curl) + ("dbus" ,dbus) + ("enca" ,enca) + ("eudev" ,eudev) + ("fontconfig" ,fontconfig) + ("freetype" ,freetype) + ("fribidi" ,fribidi) + ("glew" ,glew) + ("gnutls" ,gnutls) + ("gperf" ,gperf) + ("libcap" ,libcap) + ("libgcrypt" ,libgcrypt) + ("libjpeg" ,libjpeg) + ("libltdl" ,libltdl) + ("libssh" ,libssh) + ("libtiff" ,libtiff) + ("libxml2" ,libxml2) + ("libxmu" ,libxmu) + ("libxrandr" ,libxrandr) + ("libxrender" ,libxrender) + ("libxslt" ,libxslt) + ("libxt" ,libxt) + ("lzo" ,lzo) + ("mesa-utils" ,mesa-utils) + ("mysql" ,mysql) + ("openssl" ,openssl) + ("python" ,python-2) + ("tinyxml" ,tinyxml) + ("unzip" ,unzip) + ("zip" ,zip) + ("zlib" ,zlib))) + (home-page "http://www.glfw.org/") + (synopsis "glfw is an Open Source, multi-platform library for creating windows with OpenGL contexts and receiving input and events.") + (description "glfw is an Open Source, multi-platform library for creating windows with OpenGL contexts and receiving input and events. It is easy to integrate into existing applications and does not lay claim to the main loop. +GLFW is written in C and has native support for Windows, OS X and many Unix-like systems using the X Window System, such as Linux and FreeBSD. +GLFW is licensed under the zlib/libpng license.") + (license license:gpl2+))) |