diff options
| -rw-r--r-- | gn/packages/bnw.scm | 36 |
1 files changed, 31 insertions, 5 deletions
diff --git a/gn/packages/bnw.scm b/gn/packages/bnw.scm index db30a84..036fe2b 100644 --- a/gn/packages/bnw.scm +++ b/gn/packages/bnw.scm @@ -4,16 +4,17 @@ #:use-module (guix git-download) #:use-module (guix build-system gnu) #:use-module (gnu packages gcc) + #:use-module (gnu packages python) + #:use-module (gnu packages statistics) #:use-module (gn packages graphviz) #:use-module (gn packages javascript) #:use-module (gn packages maths) - #:use-module (gnu packages python) - #:use-module (gnu packages statistics) + #:use-module (gn packages python) #:use-module (gn packages web)) (define-public bnw (let ((commit "eb6b002b924694808384f1a8d7c6d1121806ae04") - (revision "1")) + (revision "2")) (package (name "bnw") (version (git-version "1.22" revision commit)) ; June 28, 2019 @@ -32,7 +33,12 @@ #:phases (modify-phases %standard-phases (delete 'configure) - (add-after 'patch-source-shebangs 'patch--more-shebangs + (add-after 'unpack 'patch-source + (lambda _ + (substitute* "sourcecodes/header_batchsearch.inc" + (("my_style.css") "my_new_style.css")) + #t)) + (add-after 'patch-source-shebangs 'patch-more-shebangs (lambda* (#:key inputs #:allow-other-keys) (let* ((bash (assoc-ref inputs "bash")) (graphviz (assoc-ref inputs "graphviz")) @@ -58,6 +64,10 @@ (string-append octave "/bin") (string-append python "/bin")))) (find-files "." ".*")) + (substitute* '("sourcecodes/examplefilecopy.sh" + "sourcecodes/filecopy.sh") + (("rm") (which "rm")) + (("cp") (which "cp"))) (substitute* (append '("home.php") (find-files "sourcecodes" ".php") @@ -101,17 +111,33 @@ (delete-file "sourcecodes/localscore/libRmath.so") (copy-recursively "." out)) #t)) + (add-after 'install 'make-files-executable + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (for-each + (lambda (file) + (chmod file #o555)) + (find-files out "\\.sh$")) + #t))) (replace 'build (lambda _ (with-directory-excursion "sourcecodes" (substitute* "build.sh" (("./localscore") "localscore")) (chmod "k-best/src/buildk_poster.sh" #o755) - (invoke "sh" "build.sh"))))))) + (invoke "sh" "build.sh") + ;; from info_files/plotly_notes.txt + ;(with-directory-excursion "data" + ; (setenv "HOME" "/tmp") + ; (invoke "python" "../cv_plotly.py" "LvQ") + ; (invoke "sh" "../plotly_loo.sh")) + ;(invoke "./run_loo" "LvQ Weight") + )))))) (inputs `(("graphviz" ,graphviz-2.26) ("octave" ,octave-3.4.3) ("python" ,python-2) + ("plotly" ,python2-plotly-3.2.1) ("rmath" ,rmath-standalone) ; Should this be r-minimal? Which version? ("jquery" ,web-jquery) ("awesome" ,web-font-awesome) |