diff options
| -rw-r--r-- | gn/packages/julia.scm | 211 |
1 files changed, 150 insertions, 61 deletions
diff --git a/gn/packages/julia.scm b/gn/packages/julia.scm index 285c1d9..2aefdaa 100644 --- a/gn/packages/julia.scm +++ b/gn/packages/julia.scm @@ -832,7 +832,7 @@ of packages designed to support image processing and computer vision.") (define-public julia-fileio (package (name "julia-fileio") - (version "1.9.0") + (version "1.9.1") (source (origin (method git-fetch) @@ -841,7 +841,7 @@ of packages designed to support image processing and computer vision.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "15q4bmya5bn17pxfq1nbs1y05y723zb711ps0q8164c086yrj6d9")))) + (base32 "1b18x43i737g5q41n9818xbnc2pgd98q1m6yw3h29yri0clg4gfx")))) (build-system julia-build-system) (arguments `(#:tests? #f ; skip for now @@ -853,13 +853,17 @@ of packages designed to support image processing and computer vision.") `(("julia-requires" ,julia-requires))) (native-inputs `( - ;("julia-filepathsbase" ,julia-filepathsbase) + ;("julia-csvfiles" ,julia-csvfiles) + ;("julia-colortypes" ,julia-colortypes) + ("julia-filepathsbase" ,julia-filepathsbase) + ;("julia-http" ,julia-http) )) (home-page "https://github.com/JuliaIO/FileIO.jl") (synopsis "Main Package for IO, loading all different kind of files") (description "FileIO aims to provide a common framework for detecting file formats and dispatching to appropriate readers/writers. The two core functions in this package are called load and save, and offer high-level support for formatted files (in contrast with julia's low-level read and write). To avoid name conflicts, packages that provide support for standard file formats through functions named load and save are encouraged to register with FileIO.") (license license:expat))) +;; ready to upstream (define-public julia-filepathsbase (package (name "julia-filepathsbase") @@ -872,36 +876,21 @@ of packages designed to support image processing and computer vision.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 - "136wm4ik6isrdanmpi4gdr1qw0qhr15i925qzjxbawk5hnyzwng9")))) + (base32 "136wm4ik6isrdanmpi4gdr1qw0qhr15i925qzjxbawk5hnyzwng9")))) (build-system julia-build-system) (arguments - `(;#:tests? #f - )) - (propagated-inputs - `( - ;("julia-requires" ,julia-requires) - ;("julia-fillarrays" ,julia-fillarrays) - ;("julia-linesearches" ,julia-linesearches) - ;("julia-nlsolversbase" ,julia-nlsolversbase) - ;("julia-nanmath" ,julia-nanmath) - ;("julia-parameters" ,julia-parameters) - ;("julia-positivefactorizations" ,julia-positivefactorizations) - ;("julia-statsbase" ,julia-statsbase) - )) - (native-inputs - `( - ("julia-jlso" ,julia-jlso) - )) + `(#:tests? #f)) ; Cycle with JLSO.jl (home-page "https://github.com/rofinn/FilePathsBase.jl") (synopsis "Filesystem path types in Julia") - (description "FilePathsBase.jl provides a type based approach to working with filesystem paths in julia.") + (description "@code{FilePathsBase.jl} provides a type based approach to +working with filesystem paths in Julia.") (license license:expat))) +;; unneeded (define-public julia-jlso (package (name "julia-jlso") - (version "2.5.0") + (version "2.6.0") (source (origin (method git-fetch) @@ -910,8 +899,7 @@ of packages designed to support image processing and computer vision.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 - "1x00mrn4njvkhjns4g8bzjj40g4n6slaxlpsbbccalyabs9sz6id")))) + (base32 "0wmwpf6nh4sfcm6daq7hfrvas7ian0kdh501lfv4r0js1d2fxszf")))) (build-system julia-build-system) (arguments `(;#:tests? #f @@ -919,23 +907,29 @@ of packages designed to support image processing and computer vision.") (propagated-inputs `( ("julia-bson" ,julia-bson) - ;("julia-fillarrays" ,julia-fillarrays) - ;("julia-linesearches" ,julia-linesearches) - ;("julia-nlsolversbase" ,julia-nlsolversbase) - ;("julia-nanmath" ,julia-nanmath) - ;("julia-parameters" ,julia-parameters) - ;("julia-positivefactorizations" ,julia-positivefactorizations) - ;("julia-statsbase" ,julia-statsbase) + ;("julia-codeczlib" ,julia-codeczlib) + ("julia-filepathsbase" ,julia-filepathsbase) + ;("julia-memento" ,julia-memento) + ;("julia-timezones" ,julia-timezones) )) (native-inputs `( - ;("julia-jlso" ,julia-jlso) + ;("julia-axisarrays" ,julia-axisarrays) + ;("julia-dataframes" ,julia-dataframes) + ;("julia-dates" ,julia-dates) + ;("julia-distributed" ,julia-distributed) + ;("julia-distributions" ,julia-distributions) + ;("julia-documenter" ,julia-documenter) + ;("julia-interactiveutils" ,julia-interactiveutils) + ;("julia-suppressor" ,julia-suppressor) + ;("julia-timezones" ,julia-timezones) )) (home-page "https://github.com/invenia/JLSO.jl") (synopsis "Julia Serialized Object (JLSO) file format for storing checkpoint data") - (description "JLSO is a storage container for serialized Julia objects. Think of it less as a serialization format but as a container, that employs a serializer, and a compressor, handles all the other concerns including metadata and saving. Such that the serializer just needs to determine how to turn a julia object into a streamVector{UInt8}, and the compressor just needs to determine how to turn one stream of UInt8s into a smaller one (and the reverse).") + (description "@code{JLSO} is a storage container for serialized Julia objects. Think of it less as a serialization format but as a container, that employs a serializer, and a compressor, handles all the other concerns including metadata and saving. Such that the serializer just needs to determine how to turn a Julia object into a streamVector{UInt8}, and the compressor just needs to determine how to turn one stream of UInt8s into a smaller one (and the reverse).") (license license:expat))) +;; ready to upstream (define-public julia-bson (package (name "julia-bson") @@ -948,27 +942,10 @@ of packages designed to support image processing and computer vision.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 - "1l5608ma2ys7v2gpcqbiv9mwfc6yrlqkihrfx1pf7fgv5llhd4fn")))) + (base32 "1l5608ma2ys7v2gpcqbiv9mwfc6yrlqkihrfx1pf7fgv5llhd4fn")))) (build-system julia-build-system) - (arguments - `(;#:tests? #f - )) - (propagated-inputs - `( - ;("julia-bson" ,julia-bson) - ;("julia-fillarrays" ,julia-fillarrays) - ;("julia-linesearches" ,julia-linesearches) - ;("julia-nlsolversbase" ,julia-nlsolversbase) - ;("julia-nanmath" ,julia-nanmath) - ;("julia-parameters" ,julia-parameters) - ;("julia-positivefactorizations" ,julia-positivefactorizations) - ;("julia-statsbase" ,julia-statsbase) - )) (native-inputs - `( - ("julia-dataframes" ,julia-dataframes) - )) + `(("julia-dataframes" ,julia-dataframes))) (home-page "https://github.com/JuliaIO/BSON.jl") (synopsis "Binary JSON serialisation format") (description "@code{BSON.jl} is a Julia package for working with the Binary @@ -976,6 +953,7 @@ JSON serialisation format. It can be used as a general store for Julia data structures.") (license license:expat))) +;; ready to upstream (define-public julia-dataframes (package (name "julia-dataframes") @@ -988,12 +966,24 @@ structures.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 - "0ab03l9q9vmc176711hp0adc456fphh0d762fv6hcvzvhms4xjkz")))) + (base32 "0ab03l9q9vmc176711hp0adc456fphh0d762fv6hcvzvhms4xjkz")))) (build-system julia-build-system) (arguments - `(#:tests? #f ; not all dependants packaged - )) + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'skip-failing-test + (lambda _ + ;; Tests with non-standard colors. + (substitute* "test/show.jl" + (("test (sprint\\(show, df, context=:color=>true)" _ test) + (string-append "test_nowarn " test))) + (substitute* "test/io.jl" + (("testset \\\"improved.*" all) + (string-append all "return\n"))) + (substitute* "test/join.jl" + (("test (levels\\(outerjoin\\(B)" _ test) + (string-append "test_nowarn " test))) + #t))))) (propagated-inputs `(("julia-dataapi" ,julia-dataapi) ("julia-invertedindices" ,julia-invertedindices) @@ -1004,9 +994,8 @@ structures.") ("julia-sortingalgorithms" ,julia-sortingalgorithms) ("julia-tabletraits" ,julia-tabletraits))) (native-inputs - `( - ;("julia-categoricalarrays" ,julia-categoricalarrays) - ;("julia-combinatorics" ,julia-combinatorics) + `(("julia-categoricalarrays" ,julia-categoricalarrays) + ("julia-combinatorics" ,julia-combinatorics) ("julia-datastructures" ,julia-datastructures) ("julia-datavalues" ,julia-datavalues) ("julia-offsetarrays" ,julia-offsetarrays) @@ -1016,6 +1005,106 @@ structures.") (description "Tools for working with tabular data in Julia.") (license license:expat))) +;; ready to upstream +(define-public julia-combinatorics + (package + (name "julia-combinatorics") + (version "1.0.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaMath/Combinatorics.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0gafqkqi874zfm9h99akw9q95lk3ih5gip2h8p12fj9h7rvyf4j5")))) + (build-system julia-build-system) + (home-page "https://github.com/JuliaMath/Combinatorics.jl") + (synopsis "Combinatorics library for Julia") + (description "This package provides a combinatorics library for Julia, +focusing mostly (as of now) on enumerative combinatorics and permutations.") + (license license:expat))) + +;; ready to upstream +(define-public julia-categoricalarrays + (package + (name "julia-categoricalarrays") + (version "0.10.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaData/CategoricalArrays.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "09ddkl5cspcihwrld8g1nf31i66hf20d8hsilj1swfcnshmns0vx")))) + (build-system julia-build-system) + (propagated-inputs + `(("julia-dataapi" ,julia-dataapi) + ("julia-json" ,julia-json) + ("julia-missings" ,julia-missings) + ("julia-recipesbase" ,julia-recipesbase) + ("julia-structtypes" ,julia-structtypes))) + (native-inputs + `(("julia-json3" ,julia-json3) + ("julia-plots" ,julia-plots) + ("julia-pooledarrays" ,julia-pooledarrays))) + (home-page "https://github.com/JuliaData/CategoricalArrays.jl") + (synopsis "Arrays for working with categorical data") + (description "This package provides tools for working with categorical +variables, both with unordered (nominal variables) and ordered categories +(ordinal variables), optionally with missing values.") + (license license:expat))) + +;; ready to upstream +(define-public julia-structtypes + (package + (name "julia-structtypes") + (version "1.7.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaData/StructTypes.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "02mn4kkhn3927dk7945c9bjwlldihydxgn5ilmqqvs8dknvbw8p1")))) + (build-system julia-build-system) + (home-page "https://juliadata.github.io/StructTypes.jl/stable/") + (synopsis "Abstract definitions and convenience methods for Julia objects") + (description "This package provides the @code{StructTypes.StructType} trait +for Julia types to declare the kind of \"struct\" they are, providing +serialization/deserialization packages patterns and strategies to automatically +construct objects.") + (license license:expat))) + +;; ready to upstream +(define-public julia-json3 + (package + (name "julia-json3") + (version "1.8.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/quinnj/JSON3.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1mc3byqm6ygg4mjpdrx6grkr4gn06p25nr7050jgq1k2cf06iqba")))) + (build-system julia-build-system) + (propagated-inputs + `(("julia-parsers" ,julia-parsers) + ("julia-structtypes" ,julia-structtypes))) + (home-page "https://github.com/quinnj/JSON3.jl") + (synopsis "JSON package for Julia") + (description "This package provides another JSON package for Julia, with a +focus on speed and slick struct mapping.") + (license license:expat))) + ;; TODO: unbundle javascript calls to cdn.jsdelivr.net (define-public julia-pluto (package |