diff options
| -rw-r--r-- | gn/packages/bioinformatics.scm | 62 | ||||
| -rw-r--r-- | gn/packages/cwl.scm (renamed from packages/cwl.scm) | 0 |
2 files changed, 62 insertions, 0 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm new file mode 100644 index 0000000..8197d33 --- /dev/null +++ b/gn/packages/bioinformatics.scm @@ -0,0 +1,62 @@ +;; Bioinformatics module + +(define-module (gn packages bioinformatics) + #:use-module ((guix licenses) #:prefix license:) + #:use-module (guix packages) + #:use-module (guix utils) + #:use-module (guix download) + #:use-module (guix git-download) + #:use-module (guix build-system gnu) + #:use-module (guix build-system cmake) + #:use-module (guix build-system perl) + #:use-module (guix build-system python) + #:use-module (guix build-system ruby) + #:use-module (guix build-system r) + #:use-module (guix build-system trivial) + #:use-module (gnu packages) + #:use-module (gnu packages algebra) + #:use-module (gnu packages base) + #:use-module (gnu packages boost) + #:use-module (gnu packages compression) + #:use-module (gnu packages cpio) + #:use-module (gnu packages file) + #:use-module (gnu packages java) + #:use-module (gnu packages linux) + #:use-module (gnu packages machine-learning) + #:use-module (gnu packages maths) + #:use-module (gnu packages ncurses) + #:use-module (gnu packages perl) + #:use-module (gnu packages pkg-config) + #:use-module (gnu packages popt) + #:use-module (gnu packages protobuf) + #:use-module (gnu packages python) + #:use-module (gnu packages ruby) + #:use-module (gnu packages statistics) + #:use-module (gnu packages tbb) + #:use-module (gnu packages textutils) + #:use-module (gnu packages vim) + #:use-module (gnu packages web) + #:use-module (gnu packages xml) + #:use-module (gnu packages zip) + #:use-module (srfi srfi-1)) + +(define-public r-qtl + (package + (name "r-qtl") + (version "1.37-11") + (source + (origin + (method url-fetch) + (uri (string-append + "mirror://cran/src/contrib/qtl_" + version ".tar.gz")) + (sha256 + (base32 + "0h20d36mww7ljp51pfs66xq33yq4b4fwq9nsh02dpmfhlaxgx1xi")))) + (build-system r-build-system) + (home-page "http://www.rqtl.org") + (synopsis "Tools for Analyzing QTL Experiments") + (description "Bio-statistics library for analysis of experimental +crosses to identify genes (called quantitative trait loci, QTLs) +contributing to variation in quantitative traits.") + (license license:gpl3+))) diff --git a/packages/cwl.scm b/gn/packages/cwl.scm index e158f68..e158f68 100644 --- a/packages/cwl.scm +++ b/gn/packages/cwl.scm |