aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
-rw-r--r--gn/packages/bioinformatics.scm6
1 files changed, 5 insertions, 1 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index c833e6a..c2a2e09 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -1713,11 +1713,14 @@ dictionaries to record a queryable version of the graph.")
(("\".*libsdsl\\.a\"") "\"-lsdsl\"")
(("\".*libdivsufsort\\.a\"") "\"-ldivsufsort\"")
(("\".*libdivsufsort64\\.a\"") "\"-ldivsufsort64\"")
+ (("\".*libodgi\\.a\"") "\"-lodgi\"")
(("\\$\\{sdsl-lite_INCLUDE\\}")
(search-input-directory inputs "/include/sdsl"))
(("\\$\\{sdsl-lite-divsufsort_INCLUDE\\}")
(dirname
- (search-input-file inputs "/include/divsufsort.h"))))))
+ (search-input-file inputs "/include/divsufsort.h")))
+ (("\\$\\{odgi_INCLUDE\\}")
+ (search-input-directory inputs "/include/odgi")))))
(add-before 'build 'build-abPOA
(lambda* (#:key make-flags #:allow-other-keys)
;; This helps with portability to other architectures.
@@ -1729,6 +1732,7 @@ dictionaries to record a queryable version of the graph.")
(inputs
(list jemalloc
libdivsufsort
+ odgi
openmpi
pybind11
python