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| -rw-r--r-- | README.md | 12 |
1 files changed, 8 insertions, 4 deletions
diff --git a/README.md b/README.md index 12f899f..787cfa0 100644 --- a/README.md +++ b/README.md @@ -6,9 +6,11 @@ See [Guix Notes](https://github.com/pjotrp/guix-notes/blob/master/HACKING.org) f Set the GUIX_PACKAGE_PATH to point to the root of this directory before running Guix. E.g. - env GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ guix package -A cwl + git clone https://github.com/genenetwork/guix-bioinformatics.git + export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/ + guix package -A cwl -or from the checked out Guix repo +or using a checked out Guix repo env GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ ./pre-inst-env guix package -A cwl @@ -19,14 +21,16 @@ Guix repository when tested and stable. Install the common workflow language tool cwltool with - export GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ + git clone https://github.com/genenetwork/guix-bioinformatics.git + export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/ guix package -i python2-cwltool cwtool --version 1.0.20150916041152 ## Install R/qtl - export GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ + git clone https://github.com/genenetwork/guix-bioinformatics.git + export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/ guix package -i r-qtl r R library(qtl) |