diff options
| -rw-r--r-- | gn/packages/gemma.scm | 72 |
1 files changed, 67 insertions, 5 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm index 16630ab..683ac46 100644 --- a/gn/packages/gemma.scm +++ b/gn/packages/gemma.scm @@ -61,6 +61,68 @@ #:use-module (gn packages shell) #:use-module (srfi srfi-1)) +(define-public openblas-parallel + (package + (name "openblas-parallel") + (version "0.2.20") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/xianyi/OpenBLAS/tarball/v" + version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1bd03c5xni0bla0wg1wba841b36b0sg13sjja955kn5xzvy4i61a")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ;no "check" target + ;; DYNAMIC_ARCH is only supported on x86. When it is disabled and no + ;; TARGET is specified, OpenBLAS will tune itself to the build host, so + ;; we need to disable substitutions. + #:substitutable? + ,(let ((system (or (%current-target-system) (%current-system)))) + (or (string-prefix? "x86_64" system) + (string-prefix? "i686" system) + (string-prefix? "mips" system) + (string-prefix? "aarch64" system))) + #:make-flags + (list (string-append "PREFIX=" (assoc-ref %outputs "out")) + "SHELL=bash" + ;; Build the library for all supported CPUs. This allows + ;; switching CPU targets at runtime with the environment variable + ;; OPENBLAS_CORETYPE=<type>, where "type" is a supported CPU type. + ;; Unfortunately, this is not supported on non-x86 architectures, + ;; where it leads to failed builds. + ,@(let ((system (or (%current-target-system) (%current-system)))) + (cond + ((or (string-prefix? "x86_64" system) + (string-prefix? "i686" system)) + '("DYNAMIC_ARCH=1 BINARY=64 NO_WARMUP=0 GEMM_MULTITHREAD_THRESHOLD=4 USE_THREAD=1 NO_AFFINITY=0 NO_LAPACK=1 NUM_THREADS=64")) + ;; On MIPS we force the "SICORTEX" TARGET, as for the other + ;; two available MIPS targets special extended instructions + ;; for Loongson cores are used. + ((string-prefix? "mips" system) + '("TARGET=SICORTEX")) + ;; On aarch64 force the generic 'armv8-a' target + ((string-prefix? "aarch64" system) + '("TARGET=ARMV8")) + (else '())))) + ;; no configure script + #:phases (alist-delete 'configure %standard-phases))) + (inputs + `(("gfortran" ,gfortran) + ("gfortran:lib" ,gfortran "lib"))) + (native-inputs + `(("cunit" ,cunit) + ("perl" ,perl))) + (home-page "http://www.openblas.net/") + (synopsis "Optimized BLAS library based on GotoBLAS") + (description + "OpenBLAS is a BLAS library forked from the GotoBLAS2-1.13 BSD version.") + (license license:bsd-3))) + + (define-public gsl1 ; supporting older GSL tests (package (name "gsl1") @@ -86,10 +148,10 @@ numbers.") (define-public gemma-git-gn2 ; guix candidate - (let ((commit "915b65391d4267da75ce3deeba8b9aafb2184c0a")) + (let ((commit "e69b71e0ea4ee307dca5f48c48a21103129c8635")) (package (name "gemma-git-gn2") - (version (string-append "0.97-pre5-" (string-take commit 7))) + (version (string-append "0.97-" (string-take commit 7))) (source (origin (method git-fetch) (uri (git-reference @@ -98,13 +160,13 @@ numbers.") (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "1xvjhhx7djzi2dffqnfwh6w9gn20xqavbwn5yshg0lrr035pabq6")))) + "0xfny3cmh4y78jhhr0dnnyywsc5kx91jvxdnbpsy2xfg2imm46mq")))) (inputs `( ("gsl" ,gsl) ("eigen" ,eigen) ("shunit2" ,shunit2) ("lapack" ,lapack) - ("openblas" ,openblas) + ("openblas-parallel" ,openblas-parallel) ("zlib" ,zlib) )) (native-inputs ; for running tests @@ -121,7 +183,7 @@ numbers.") "/include/eigen3/") "FORCE_DYNAMIC=1" "DEBUG=1" - "WITH_OPENBLAS=1") + ) #:phases ; "/include/eigen3/" (modify-phases %standard-phases |