diff options
| -rw-r--r-- | gn/packages/bioinformatics.scm | 26 | ||||
| -rw-r--r-- | gn/packages/crates-io.scm | 25 |
2 files changed, 51 insertions, 0 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 2b1d514..4b37c8f 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -548,6 +548,32 @@ remove these, as they provide little information for many downstream applications, such as haplotype panels or other imputation references.") (license license:expat))) +(define-public fastix + (package + (name "fastix") + (version "0.1.0") + (source (origin + (method url-fetch) + (uri (crate-uri "fastix" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1mzk65mg8vx0hz39xis6zqdmq56abhmza656gn9pgmlsn151gpx2")))) + (build-system cargo-build-system) + (arguments + `(#:install-source? #f + #:cargo-inputs + (("rust-clap" ,rust-clap-2)) + #:cargo-development-inputs + (("rust-assert-cmd" ,rust-assert-cmd-0.12) + ("rust-predicates" ,rust-predicates-1)))) + (home-page "https://github.com/ekg/fastix") + (synopsis "Prefix-renaming FASTA records") + (description "A command line tool to add prefixes to FASTA headers. The +idea is to support pangenomic applications, following the +@url{https://github.com/pangenome/PanSN-spec, PanSN} hierarchical naming +specification.") + (license license:expat))) + (define-public gafpack (let ((commit "ad31875b6914d964c6fd72d1bf334f0843538fb6") ; November 10, 2022 (revision "1")) diff --git a/gn/packages/crates-io.scm b/gn/packages/crates-io.scm index 79832bc..557c980 100644 --- a/gn/packages/crates-io.scm +++ b/gn/packages/crates-io.scm @@ -10,6 +10,31 @@ #:use-module (gnu packages maths) #:use-module (gnu packages python)) +(define-public rust-assert-cmd-0.12 + (package + (name "rust-assert-cmd") + (version "0.12.2") + (source (origin + (method url-fetch) + (uri (crate-uri "assert-cmd" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1xfn2spazxk3ljj9q3250a24gndja9vwa0h0rnbccdrbd4ncyvwk")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-doc-comment" ,rust-doc-comment-0.3) + ("rust-escargot" ,rust-escargot-0.5) + ("rust-predicates" ,rust-predicates-1) + ("rust-predicates-core" ,rust-predicates-core-1) + ("rust-predicates-tree" ,rust-predicates-tree-1) + ("rust-wait-timeout" ,rust-wait-timeout-0.2)))) + (home-page "https://github.com/assert-rs/assert_cmd") + (synopsis "Test CLI Applications.") + (description "Test CLI Applications.") + (license (list license:expat license:asl2.0)))) + (define-public rust-bgzip-0.2 (package (name "rust-bgzip") |