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| -rw-r--r-- | gn/packages/jupyterhub.scm | 480 |
1 files changed, 480 insertions, 0 deletions
diff --git a/gn/packages/jupyterhub.scm b/gn/packages/jupyterhub.scm new file mode 100644 index 0000000..a331f09 --- /dev/null +++ b/gn/packages/jupyterhub.scm @@ -0,0 +1,480 @@ +(define-module (gn packages jupyterhub) + #:use-module ((guix licenses) #:prefix license:) + #:use-module (guix packages) + #:use-module (guix download) + #:use-module (guix git-download) + #:use-module (guix build-system python) + #:use-module (gnu packages check) + #:use-module (gnu packages databases) + #:use-module (gnu packages libffi) + #:use-module (gnu packages linux) + #:use-module (gnu packages monitoring) + #:use-module (gnu packages openstack) + #:use-module (gnu packages protobuf) + #:use-module (gnu packages python-crypto) + #:use-module (gnu packages python-web) + #:use-module (gnu packages python-xyz) + #:use-module (gnu packages serialization) + #:use-module (gnu packages time) + ) + +(define-public jupyterhub + (package + (name "jupyterhub") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jupyterhub" version)) + (sha256 + (base32 + "0zx6gw9yhgki05j21p6x1x2sf5a2mg2c2mx0ii8rl6q4b98ilm1k")))) + (build-system python-build-system) + (arguments + '(#:tests? #f ; Tests require a webserver, postgresql database and npm. + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (if tests? + (;; From .travis.yml + (invoke "initdb" "main") + (invoke "pg_ctl" "-D" "main" "start") + (invoke "psql" "--list") + ;; From ci/init-db.sh + (invoke "psql" "-d" "postgres" "-c" + "CREATE DATABASE jupyterhub_upgrade_072;") + (invoke "psql" "-d" "postgres" "-c" + "CREATE DATABASE jupyterhub_upgrade_081;") + (invoke "psql" "-d" "postgres" "-c" + "CREATE DATABASE jupyterhub_upgrade_094;") + (invoke "pytest" "-v" "--maxfail=2" "jupyterhub/tests")) + #t)))))) + (propagated-inputs + `(("python-alembic" ,python-alembic) + ("python-async-generator" ,python-async-generator) + ("python-certipy" ,python-certipy) + ("python-dateutil" ,python-dateutil) + ("python-entrypoints" ,python-entrypoints) + ("python-jinja2" ,python-jinja2) + ("python-oauthlib" ,python-oauthlib) + ("python-pamela" ,python-pamela) + ("python-prometheus-client" ,python-prometheus-client) + ("python-requests" ,python-requests) + ("python-sqlalchemy" ,python-sqlalchemy) + ("python-tornado" ,python-tornado) + ("python-traitlets" ,python-traitlets))) + (native-inputs + `( + ;("postgresql" ,postgresql) + ;("python-psycopg2" ,python-psycopg2) + + ("python-beautifulsoup4" ,python-beautifulsoup4) + ("python-jupyter-client" ,python-jupyter-client) + ("python-notebook" ,python-notebook) + ("python-pytest" ,python-pytest) + ("python-pyzmq" ,python-pyzmq) + ("python-requests-mock" ,python-requests-mock))) + (home-page "https://jupyter.org") + (synopsis "Multi-user server for Jupyter notebooks") + (description + "JupyterHub is the best way to serve Jupyter notebook for multiple users. +It can be used in a classes of students, a corporate data science group or +scientific research group. It is a multi-user Hub that spawns, manages, and +proxies multiple instances of the single-user Jupyter notebook server.") + (license license:bsd-3))) + +(define-public the-littlest-jupyterhub + (let ((commit "770b95027951c1e191690b0f65d3e2e2d72ba05f") ; Oct 30, 2019 + (revision "1")) + (package + (name "the-littlest-jupyterhub") + (version (git-version "0.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/jupyterhub/the-littlest-jupyterhub.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0dnin2rwrqr8nzf7gj6sjqchvdi24kd0sgjh655c4zq1hdbpsmc6")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'loosen-input-requirements + (lambda _ + (substitute* "setup.py" + (("==.*'") "'")) + #t)) + (add-after 'unpack 'patch-some-sources + (lambda* (#:key inputs #:allow-other-keys) + (let ((python (assoc-ref inputs "python"))) + ;; Delete some tests that we're not going to run. + (delete-file "tests/test_conda.py") + (delete-file "tests/test_user.py") + (delete-file "tests/test_utils.py") + ;; No need to make node available for the test suite. + (substitute* "tests/test_installer.py" + (("installer.ensure_node.*") "") + (("/usr/bin/node") (string-append python "/bin/python"))) + ;; Don't download traefik. + (substitute* "tests/test_traefik.py" + (("traefik.ensure_traefik_binary") + "#traefik.ensure_traefik_binary") + (("assert traefik") "#assert traefik") + (("assert \\(traefik") "#assert (traefik")) + #t))) + (replace 'check + (lambda _ + (invoke "python3" "-m" "pytest" "-v" "tests/")))))) + (propagated-inputs + `(("python-ruamel.yaml" ,python-ruamel.yaml) + ("python-jinja2" ,python-jinja2) + ("python-pluggy" ,python-pluggy) + ("python-passlib" ,python-passlib) + ("python-backoff" ,python-backoff) + ("python-requests" ,python-requests) + ("python-jupyterhub-traefik-proxy" ,python-jupyterhub-traefic-proxy))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytoml" ,python-pytoml))) + (home-page "https://the-littlest-jupyterhub.readthedocs.io/en/latest/") + (synopsis "JupyterHub server for a single server") + (description + "The Littlest JupyterHub (TLJH) distribution helps you provide Jupyter +Notebooks to 1-50 users on a single server. Administrators who do not consider +themselves 'system administrators' but would like to provide hosted Jupyter +Notebooks for their students / users are the primary audience. All users are +provided with the same environment, and administrators can easily install +libraries into this environment without any specialized knowledge.") + (license license:bsd-3)))) + +(define-public python-backoff + (package + (name "python-backoff") + (version "1.8.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "backoff" version)) + (sha256 + (base32 + "0g2s4p34ml8dnldbj5qkg7ni5bwsq492nhry2inc2pn66qyx47iz")))) + (build-system python-build-system) + (home-page "https://github.com/litl/backoff") + (synopsis "Function decoration for backoff and retry") + (description + "Function decoration for backoff and retry") + (license license:expat))) + +(define-public python-jupyterhub-traefic-proxy + (package + (name "python-jupyterhub-traefic-proxy") + (version "0.1.4") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/jupyterhub/traefik-proxy.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "021lqll3b84qmyw417wj15wpvs8ckvabx8ygm4fjy9bdllaxmmag")))) + (build-system python-build-system) + (propagated-inputs + `(("jupyterhub" ,jupyterhub) + ("python-etcd3" ,python-etcd3) + ("python-aiohttp" ,python-aiohttp) + ("python-passlib" ,python-passlib) + ("python-consul" ,python-consul) + ("python-toml" ,python-toml) + ("python-escapism" ,python-escapism))) + (native-inputs + `(("python-jupyter-client" ,python-jupyter-client) + ("python-notebook" ,python-notebook) + ("python-numpy" ,python-numpy) + ("python-pyzmq" ,python-pyzmq) + ("python-websockets" ,python-websockets))) + (home-page "https://jupyterhub-traefik-proxy.readthedocs.io/") + (synopsis "JupyterHub proxy implementation with traefik") + (description "An implementation of the JupyterHub proxy api with traefik: an +extremely lightweight, portable reverse proxy implementation, that supports load +balancing and can configure itself automatically and dynamically.") + (license license:bsd-3))) + +(define-public python-etcd3 + (package + (name "python-etcd3") + (version "0.10.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "etcd3" version)) + (sha256 + (base32 + "11qf9v69h5gx212p9hv3m8z290gagn834x89y0gn7iijy2wj9995")))) + (build-system python-build-system) + (arguments '(#:tests? #f)) ; Tests require running etcd. + (propagated-inputs + `(("python-grpcio" ,python-grpcio) + ("python-protobuf" ,python-protobuf) + ("python-tenacity" ,python-tenacity))) + (home-page "https://github.com/kragniz/python-etcd3") + (synopsis "Python client for the etcd3 API") + (description "Python client for the etcd3 API") + (license license:asl2.0))) + +(define-public python-escapism + (package + (name "python-escapism") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "escapism" version)) + (sha256 + (base32 + "11lv1kqlk2brx1i2yczajga4c657z184f6fsnf2mnpx90kxc272z")))) + (build-system python-build-system) + (home-page "https://github.com/minrk/escapism") + (synopsis "Simple, generic API for escaping strings") + (description + "Simple, generic API for escaping strings.") + (license license:expat))) + +(define-public python-tenacity + (package + (name "python-tenacity") + (version "6.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "tenacity" version)) + (sha256 + (base32 + "0w9miqmmi63yqp9lw7p6nf6gh5pa57vg60v6f94f11qqpg19gwvj")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (invoke "pytest")))))) + (propagated-inputs + `(("python-six" ,python-six))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-setuptools-scm" ,python-setuptools-scm) + ("python-tornado" ,python-tornado))) + (home-page "https://github.com/jd/tenacity") + (synopsis "Retry code until it succeeeds") + (description "Tenacity is a general-purpose retrying library to simplify the +task of adding retry behavior to just about anything.") + (license license:asl2.0))) + +(define-public python-certipy + (package + (name "python-certipy") + (version "0.1.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "certipy" version)) + (sha256 + (base32 + "0n980gqpzh0fm58h3i4mi2i10wgj606lscm1r5sk60vbf6vh8mv9")))) + (build-system python-build-system) + (propagated-inputs + `(("python-pyopenssl" ,python-pyopenssl))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/LLNL/certipy") + (synopsis "Utility to create and sign CAs and certificates") + (description + "Utility to create and sign CAs and certificates") + (license license:bsd-3))) + +(define-public python-pamela + (package + (name "python-pamela") + (version "1.0.0") + (source + (origin + ;; Tests not distributed in pypi release. + (method git-fetch) + (uri (git-reference + (url "https://github.com/minrk/pamela.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0cg3w6np1fbjpvzhv54xg567hpf38szwp2d4gvzb9r736nxbv0vr")))) + (build-system python-build-system) + (arguments + '(#:tests? #f ; Tests aren't designed to be run inside a container. + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'hardcode-pam.so + (lambda* (#:key inputs #:allow-other-keys) + (let ((pam (assoc-ref inputs "linux-pam"))) + (substitute* "pamela.py" + ; (("\"pam\"") (string-append "\"" pam "/lib/libpam.so\""))) + (("find_library\\(\"pam\")") (string-append "'" pam "/lib/libpam.so'"))) + ; (("LIBPAM =.*") (string-append "LIBPAM = \"" pam "/lib\"\n"))) + #t))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (if tests? + (if (file-exists? "test_pamela.py") + (invoke "py.test" "--assert=plain" "test_pamela.py") + (invoke "python" "-m" "pamela" "-a" "`whoami`")) + #t)))))) + (inputs + `(("linux-pam" ,linux-pam))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/minrk/pamela") + (synopsis "PAM interface using ctypes") + (description "PAM interface using ctypes") + (license license:expat))) + +(define-public python-pifpaf + (package + (name "python-pifpaf") + (version "2.2.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pifpaf" version)) + (sha256 + (base32 + "09xixb4ddjp15spbm2788yq6rjr5fzy1p8dzcqyzp6pbkv7vwxvg")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (invoke "python" "setup.py" "testr" "--slowest" + "--testr-args=until-failure")))))) + (propagated-inputs + `(("python-click" ,python-click) + ("python-daiquiri" ,python-daiquiri) + ("python-fixtures" ,python-fixtures) + ("python-jinja2" ,python-jinja2) + ("python-pbr" ,python-pbr) + ("python-psutil" ,python-psutil) + ("python-six" ,python-six) + ("python-xattr" ,python-xattr))) + (native-inputs + `(("python-mock" ,python-mock) + ("python-os-testr" ,python-os-testr) + ("python-requests" ,python-requests) + ("python-testrepository" ,python-testrepository) + ("python-testtools" ,python-testtools))) + (home-page "https://github.com/jd/pifpaf") + (synopsis + "Suite of tools and fixtures to manage daemons for testing") + (description + "Suite of tools and fixtures to manage daemons for testing") + (license license:asl2.0))) + +(define-public python-daiquiri + (package + (name "python-daiquiri") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "daiquiri" version)) + (sha256 + (base32 + "1hclvhfm3ix40g3m7g14w0nz2qawb7gp3fjba7d6xzxhh9mj6fn1")))) + (build-system python-build-system) + (native-inputs + `(("python-json-logger" ,python-json-logger) + ("python-pbr" ,python-pbr) + ("python-pytest" ,python-pytest) + ("python-six" ,python-six))) + (home-page "https://github.com/jd/daiquiri") + (synopsis "Library to configure Python logging easily") + (description + "Library to configure Python logging easily") + (license license:asl2.0))) + +(define-public python-xattr + (package + (name "python-xattr") + (version "0.9.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "xattr" version)) + (sha256 + (base32 + "0n3llkk488bjywzifgyhyxcfdz22851k3s2h8g69kzmlxa7b5cbw")))) + (build-system python-build-system) + (propagated-inputs + `(("python-cffi" ,python-cffi))) + (home-page "https://github.com/xattr/xattr") + (synopsis "Python wrapper for extended filesystem attributes") + (description + "Python wrapper for extended filesystem attributes") + (license license:expat))) + +(define-public python-json-logger + (package + (name "python-json-logger") + (version "0.1.11") + (source + (origin + (method url-fetch) + (uri (pypi-uri "python-json-logger" version)) + (sha256 + (base32 + "10g2ya6nsvn5vxzvq2wb8q4d43i3d7756i5rxyjna6d0y9i138xp")))) + (build-system python-build-system) + (home-page "https://github.com/madzak/python-json-logger") + (synopsis "Python library adding a json log formatter") + (description + "A python library adding a json log formatter") + (license license:bsd-3))) + +(define-public python-websockets + (package + (name "python-websockets") + (version "8.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "websockets" version)) + (sha256 + (base32 + "03s3ml6sbki24aajllf8aily0xzrn929zxi84p50zkkbikdd4raw")))) + (build-system python-build-system) + (home-page "https://github.com/aaugustin/websockets") + (synopsis "Implementation of the WebSocket Protocol") + (description + "An implementation of the WebSocket Protocol (RFC 6455 & 7692).") + (license license:bsd-3))) + +(define-public python-pytoml + (package + (name "python-pytoml") + (version "0.1.21") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pytoml" version)) + (sha256 + (base32 + "1rv1byiw82k7mj6aprcrqi2vdabs801y97xhfnrz7kxds34ggv4f")))) + (build-system python-build-system) + (home-page "https://github.com/avakar/pytoml") + (synopsis "A parser for TOML-0.4.0") + (description "A parser for TOML-0.4.0") + (license license:expat))) |