diff options
| -rw-r--r-- | gn/packages/gemma.scm | 101 |
1 files changed, 52 insertions, 49 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm index e3a03c6..ba272f5 100644 --- a/gn/packages/gemma.scm +++ b/gn/packages/gemma.scm @@ -58,58 +58,9 @@ #:use-module (gnu packages web) #:use-module (gnu packages xml) #:use-module (gnu packages bootstrap) - ; #:use-module (gn packages ldc) - #:use-module (gn packages ldc) #:use-module (gn packages shell) #:use-module (srfi srfi-1)) -(define-public faster-lmm-d ; incomplete, just creates build environment - (let ((commit "dea6abf61b633ed55e6a2997068f2d54abe5376b")) - (package - (name "faster-lmm-d") - (version (string-append "0.0.1-" (string-take commit 7))) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/pjotrp/faster_lmm_d.git") - (commit commit))) - (file-name (string-append name "-" version "-checkout")) - (sha256 - (base32 - "1syrn32g1q06bsnrk9wl7q2m5mvvglys2zl92rx0bi49kp2i0ngv")))) - (build-system trivial-build-system) - (propagated-inputs - `(("openblas" ,openblas) - ("gsl" ,gsl) - ("lapack" ,lapack) - ("dub" ,dub) - ("gcc" ,gcc) - ("glibc" ,glibc) - ("binutils" ,binutils) ; for ld linker - ("gfortran:lib" ,gfortran "lib") - ; ("make" ,make) - )) - (native-inputs - `(("ldc" ,ldc) - ("shunit2" ,shunit2) - ("which" ,which) - )) - (arguments - `(#:modules ((guix build utils)) - #:builder - (begin - (use-modules (guix build utils)) - (let ((target (string-append (assoc-ref %outputs "out") - "/share"))) - (write target) - (mkdir-p target) - (copy-recursively (assoc-ref %build-inputs "source") target) - #t)))) - (home-page "https://github.com/pjotrp") - (synopsis "Parallel LMM") - (description - ".") - (license license:gpl3)))) (define-public openblas-git (let ((commit "893bd14e924fa72a4ed345a75d64c637f1b1c550")) @@ -365,3 +316,55 @@ association studies (GWAS).") (synopsis "GEMMA development environment imports build tools, gemma-wrapper and faster-lmm-d") (description "Gemma-development") (license license:gpl3)))) + +(define-public faster-lmm-d-dev ; incomplete, just creates build environment + (let ((commit "68e22043ce0ca348cbc4f3bdd015e036ba9ac5f2")) + (package + (name "faster-lmm-d-dev") + (version (string-append "0.0.1-" (string-take commit 7))) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/genetics-statistics/faster_lmm_d.git") + (commit commit))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "0awcsrmpq1zbcy145l5ssmsxzfq5dq9yr0901hk977lmjf99gxng")))) + (build-system trivial-build-system) + (propagated-inputs + `(("openblas" ,openblas) + ("gsl" ,gsl) + ; ("lapack" ,lapack) + ("dub" ,dub) + ("gcc" ,gcc-7) + ("gdb" ,gdb) + ; ("glibc" ,glibc) + ("binutils" ,binutils) ; for ld linker + ("gfortran:lib" ,gfortran "lib") + ; ("make" ,make) + ("ldc" ,ldc) + ("shunit2" ,shunit2) + ("linux-libre-headers" ,linux-libre-headers) + ("openblas" ,openblas-git) + )) + (inputs + `( + ("which" ,which) + )) + (arguments + `(#:modules ((guix build utils)) + #:builder + (begin + (use-modules (guix build utils)) + (let ((target (string-append (assoc-ref %outputs "out") + "/share"))) + (write target) + (mkdir-p target) + ; (copy-recursively (assoc-ref %build-inputs "source") target) + #t)))) + (home-page "https://github.com/pjotrp") + (synopsis "Build system for faster-lmm-d") + (description + ".") + (license license:gpl3)))) |