diff options
| -rw-r--r-- | gn/packages/hyphy.scm | 63 |
1 files changed, 21 insertions, 42 deletions
diff --git a/gn/packages/hyphy.scm b/gn/packages/hyphy.scm index 23c0406..fea73a4 100644 --- a/gn/packages/hyphy.scm +++ b/gn/packages/hyphy.scm @@ -17,7 +17,7 @@ ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. (define-module (gn packages hyphy) - #:use-module ((guix licenses)) + #:use-module ((guix licenses) #:prefix license:) #:use-module (guix download) #:use-module (guix build-system gnu) #:use-module (guix build-system cmake) @@ -54,52 +54,31 @@ (sha256 (base32 "00i3609nywb1xfq50p3kvfbvahql241ciq23jrf67z0yp4y5l5a9")))) - (native-inputs `(("autoconf" ,autoconf) - ("automake" ,automake) - ("cmake" ,cmake) - ("gawk" ,gawk) - ("libtool" ,libtool) - ("pkg-config" ,pkg-config))) - (inputs `(("boost" ,boost) - ("curl" ,curl) - ("atlas" ,atlas) - ("dbus" ,dbus) - ("enca" ,enca) - ("eudev" ,eudev) - ("glew" ,glew) - ("lapack" ,lapack) - ("libcap" ,libcap) - ("libjpeg" ,libjpeg) - ("libltdl" ,libltdl) - ("libtiff" ,libtiff) - ("libyajl" ,libyajl) - ("mesa-utils" ,mesa-utils) - ("mysql" ,mysql) - ("python" ,python-2) - ("freeimage" ,freeimage) - ("fftw" ,fftw) - ("fftwf" ,fftwf) - ("fftw-openmpi" ,fftw-openmpi) - ("glew" ,glew) - ("glu" ,glu) - ("openblas" ,openblas) - ("git" ,git) - ("cmake" ,cmake))) + (inputs + `(("python" ,python-2) + ("fftw-openmpi" ,fftw-openmpi))) (build-system cmake-build-system) (arguments '(#:phases (modify-phases %standard-phases - (add-after 'unpack `bootstrap - (lambda _ - (zero? (system* "make" "MPI"))))))) + (add-after 'unpack `bootstrap + (lambda _ + (zero? (system* "make" "MPI"))))))) (arguments - `(#:configure-flags '("-DCMAKE_BUILD_TYPE=Release") #:tests? #f)) - (synopsis "hyphy: an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning.") - (description "HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. - It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for - parallel computing environments (via message passing interface (MPI)) and it can be compiled as a shared library and called from other programming environments such as - Python and R. ") + `(#:configure-flags '("-DCMAKE_BUILD_TYPE=Release") + #:tests? #f)) + (synopsis "hyphy: an open-source software package for the analysis +of genetic sequences using techniques in phylogenetics, molecular +evolution, and machine learning.") + (description "HyPhy is an open-source software package for the +analysis of genetic sequences using techniques in phylogenetics, +molecular evolution, and machine learning. It features a complete +graphical user interface (GUI) and a rich scripting language for +limitless customization of analyses. Additionally, HyPhy features +support for parallel computing environments (via message passing +interface (MPI)) and it can be compiled as a shared library and called +from other programming environments such as Python and R. ") (home-page "http://hyphy.org") - (license (list gpl2 gpl2+ gpl3 gpl3+)))) + (license license:expat))) |