diff options
| -rw-r--r-- | gn/packages/bioinformatics.scm | 5 | ||||
| -rw-r--r-- | gn/packages/python.scm | 59 |
2 files changed, 64 insertions, 0 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 35ff166..2a6aacc 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -236,15 +236,20 @@ confidence region for the location of a putative QTL.") ("python2-htmlgen-gn" ,python2-htmlgen-gn) ("python2-jinja2" ,python2-jinja2) ("python2-sqlalchemy" ,python2-sqlalchemy) + ("python2-flask-sqlalchemy" ,python2-flask-sqlalchemy) ("python2-setuptools" ,python2-setuptools) ("python2-scipy" ,python2-scipy) ;; looks like python-numarray is not needed ("python2-mysqlclient" ,python2-mysqlclient) + ("python2-numarray" ,python2-numarray) ("python2-numpy" ,python2-numpy) ("python2-pandas" ,python2-pandas) ("python2-passlib" ,python2-passlib) + ("python2-piddle" ,python2-piddle) ("python2-redis" ,python2-redis) ("python2-requests" ,python2-requests) + ("python2-rpy2" ,python2-rpy2) + ("python2-scipy" ,python2-scipy) ("python2-simplejson" ,python2-simplejson) ("python2-pyyaml" ,python2-pyyaml) ("python-xlsxwriter" ,python-xlsxwriter) diff --git a/gn/packages/python.scm b/gn/packages/python.scm index 09251d7..70d10f9 100644 --- a/gn/packages/python.scm +++ b/gn/packages/python.scm @@ -79,6 +79,34 @@ (define-public python2-flask (package-with-python2 python-flask)) +(define-public python-flask-sqlalchemy + (package + (name "python-flask-sqlalchemy") + (version "2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Flask-SQLAlchemy" version)) + (sha256 + (base32 + "1i9ps5d5snih9xlqhrvmi3qfiygkmqzxh92n25kj4pf89kj4s965")))) + (build-system python-build-system) + (inputs + `(("python-setuptools" ,python-setuptools) + ("python-flask" ,python-flask) + ("python-sqlalchemy" ,python-sqlalchemy) + )) + (home-page + "http://github.com/mitsuhiko/flask-sqlalchemy") + (synopsis + "Adds SQLAlchemy support to your Flask application") + (description + "Adds SQLAlchemy support to your Flask application") + (license license:bsd-3))) + +(define-public python2-flask-sqlalchemy + (package-with-python2 python-flask-sqlalchemy)) + (define-public python-xlsxwriter (package (name "python-xlsxwriter") @@ -329,6 +357,37 @@ project)") (description #f) (license #f))) +(define-public python2-piddle + (package + (name "python2-piddle") + (version "1.0.15") + (source + (origin + (method url-fetch) + (uri (string-append + ;; http://sourceforge.net/projects/numpy/files/Old%20Numarray/1.5.2/numarray-1.5.2.tar.gz/download + "mirror://sourceforge/piddle/piddle-" version ".zip" + )) + ;; (file-name (string-append name "-" version ".zip")) + (sha256 + (base32 + "0jaxfsrcgqb5cf2wznxnpdws5khlrdixmg85lrhq2zl9cy6dfdya")))) + (native-inputs + `(("unzip" ,unzip))) + + (build-system python-build-system) + ;; (native-inputs + ;; `(("python-setuptools" ,python-setuptools))) + (arguments + `(#:python ,python-2 + #:tests? #f + )) ; no 'setup.py test' really! + (home-page "http://www.numpy.org/") + (synopsis "Canvas drawing library for python2 (old!)") + (description #f) + (license #f))) + + (define-public python2-numarray (package (name "python2-numarray") |