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authorPjotr Prins2015-09-18 12:51:15 +0900
committerPjotr Prins2015-09-18 12:51:15 +0900
commitfebf6e8cf48dea8ea4fa88ce8575f0a3aa8a95d4 (patch)
tree9dc42cd9f97666f47090a14d0f8c3a900bf3ab1c /packages
parentd2e6a4c4d5214d870f0e37be05df3795164091db (diff)
downloadguix-bioinformatics-febf6e8cf48dea8ea4fa88ce8575f0a3aa8a95d4.tar.gz
Module
Diffstat (limited to 'packages')
-rw-r--r--packages/cwl.scm131
1 files changed, 0 insertions, 131 deletions
diff --git a/packages/cwl.scm b/packages/cwl.scm
deleted file mode 100644
index e158f68..0000000
--- a/packages/cwl.scm
+++ /dev/null
@@ -1,131 +0,0 @@
-;; Experimental packaging for the Common Workflow Language (started by Bruno)
-
-(define-module (gn packages cwl)
- #:use-module ((guix licenses) #:prefix license:)
- #:use-module (gnu packages)
- #:use-module (gnu packages python)
- #:use-module (guix download)
- #:use-module (guix packages)
- #:use-module (guix git-download)
- #:use-module (guix utils)
- #:use-module (guix build-system gnu)
- #:use-module (guix build-system python)
- #:use-module (guix build-system trivial)
- #:use-module (srfi srfi-1))
-
-(define-public python-cwltool
- (package
- (name "python-cwltool")
- (version "1.0.20150916041152")
- (source
- (origin
- (method url-fetch)
- (uri (string-append
- "https://pypi.python.org/packages/source/c/cwltool/cwltool-"
- version
- ".tar.gz"))
- (sha256
- (base32
- "1kqxc6nvq4nr8qdv39ycdi6fhzaipgjpmbghsz94ij6jhf5r3dq2"))))
- (build-system python-build-system)
- (inputs
- `(("python-setuptools" ,python-setuptools)))
- (home-page
- "https://github.com/common-workflow-language/common-workflow-language")
- (synopsis
- "Common workflow language reference implementation")
- (description
- "Common workflow language reference implementation")
- (license asl2.0)))
-
-(define-public python-rdflib-jsonld
- (package
- (name "python-rdflib-jsonld")
- (version "0.3")
- (source
- (origin
- (method url-fetch)
- (uri (string-append
- "https://pypi.python.org/packages/source/r/rdflib-jsonld/rdflib-jsonld-"
- version
- ".tar.gz"))
- (sha256
- (base32
- "121a876k49xl85jvikyh4hzvm34456ikw66cra5dfyr15br1qjll"))))
- (build-system python-build-system)
- (inputs
- `(("python-setuptools" ,python-setuptools)))
- (home-page
- "https://github.com/RDFLib/rdflib-jsonld")
- (synopsis
- "rdflib extension adding JSON-LD parser and serializer")
- (description
- "rdflib extension adding JSON-LD parser and serializer")
- (license bsd-3)))
-
-(define-public python-schema-salad
- (package
- (name "python-schema-salad")
- (version "1.0.2")
- (source
- (origin
- (method url-fetch)
- (uri (string-append
- "https://pypi.python.org/packages/source/s/schema-salad/schema-salad-"
- version
- ".tar.gz"))
- (sha256
- (base32
- "09axiiirq73s1cs21n8mkdslaca2gxc2mlayyl6yiaq98cfgfh37"))))
- (build-system python-build-system)
- (arguments `(#:tests? #f)) ;; No tests.
- (inputs
- `(("python-cython" ,python-cython)
- ("python-setuptools" ,python-setuptools)
- ("python-rdflib-jsonld" ,python-rdflib-jsonld)
- ("python-rdflib" ,python-rdflib)
- ("python-mistune" ,python-mistune)))
- (propagated-inputs
- `(("python-rdflib" ,python-rdflib)))
- (native-inputs
- `(("python-rdflib" ,python-rdflib)))
- (home-page
- "https://github.com/common-workflow-language/common-workflow-language")
- (synopsis
- "Schema Annotations for Linked Avro Data (SALAD)")
- (description
- "Schema Annotations for Linked Avro Data (SALAD)")
- (license asl2.0)))
-
-(define-public python-rdflib
- (package
- (name "python-rdflib")
- (version "4.2.0")
- (source
- (origin
- (method url-fetch)
- (uri (string-append
- "https://pypi.python.org/packages/source/r/rdflib/rdflib-"
- version
- ".tar.gz"))
- (patches
- ;; The patch has no effect under Python 3.
- (list (search-patch "python2-rdflib-drop-sparqlwrapper.patch")))
- (sha256
- (base32
- "1h3f8yl9frjz8rsykjdjk83qsrcvld3qa7pkzh69s91h97ydl83l"))))
- (build-system python-build-system)
- (inputs
- `(("python-html5lib" ,python-html5lib)
- ("python-isodate" ,python-isodate)
- ("python-pyparsing" ,python-pyparsing)
- ("python-setuptools" ,python-setuptools)))
- (home-page "https://github.com/RDFLib/rdflib")
- (synopsis
- "Python RDF library")
- (description
- "RDFLib is a Python library for working with RDF, a simple yet
-powerful language for representing information.")
- (license (non-copyleft "file://LICENSE"
- "See LICENSE in the distribution."))))
-