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authorpjotrp2026-04-18 13:45:20 +0200
committerpjotrp2026-04-18 13:45:20 +0200
commit3fcf465dc1d3f268d8d1d8760f48885464336f60 (patch)
treed6cabf5a388aa2e564bd7f46ccb541910ff949d5 /gn
parent035d7e4f06c595e8a42d8ad6cd1ad6e42a21a4f0 (diff)
downloadguix-bioinformatics-3fcf465dc1d3f268d8d1d8760f48885464336f60.tar.gz
Downgrade to wfmash-0.14 for mempang and add tools for the workshop
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/pangenome.scm5
1 files changed, 4 insertions, 1 deletions
diff --git a/gn/packages/pangenome.scm b/gn/packages/pangenome.scm
index b82845e..ad7e37b 100644
--- a/gn/packages/pangenome.scm
+++ b/gn/packages/pangenome.scm
@@ -1509,7 +1509,7 @@ between sequences.")
            vcflib
            vg
            wally
-           wfmash))
+           wfmash-0.14))
     (home-page "https://github.com/pangenome")
     (synopsis "Pangenome tools collection")
     (description "Meta package that provides the main pangenome tools:
@@ -1534,9 +1534,11 @@ kfilt, miniprot, pangene, wally, and vcfbub.")
      (list pangenomes
            bc
            bcftools
+           coreutils
            fastix
            gnuplot
            graphviz
+           grep
            gzip
            multiqc
            mummer
@@ -1548,6 +1550,7 @@ kfilt, miniprot, pangene, wally, and vcfbub.")
            python-pycairo
            rtg-tools
            r-minimal
+           sed
            r-ape
            r-data-table
            r-gggenes