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| author | Arun Isaac | 2024-12-04 22:52:50 +0000 |
|---|---|---|
| committer | Arun Isaac | 2024-12-04 22:53:49 +0000 |
| commit | 2c17013d5c147bcef51a32fb45010a7730db16b2 (patch) | |
| tree | 052b063f13e48c9f91a72719862535d5d07f0abe /gn | |
| parent | 9d952524d81341d6fc29310b8b5c14adf1424a1b (diff) | |
| download | guix-bioinformatics-2c17013d5c147bcef51a32fb45010a7730db16b2.tar.gz | |
gn: graphaligner: Update to 1.0.20.
* gn/packages/bioinformatics.scm (graphaligner): Update to 1.0.20.
[arguments]: Substitute in bamtools include directory.
[inputs]: Add bamtools.
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 12 |
1 files changed, 7 insertions, 5 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 2ef727f..3f89abe 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -1899,14 +1899,13 @@ The path-guided stochastic gradient descent based 1D sort implemented in (define-public graphaligner (package (name "graphaligner") - (version "1.0.19") + (version "1.0.20") (source (origin (method url-fetch) - (uri (string-append "https://github.com/maickrau/GraphAligner/files/" - "14037134/GraphAligner.tar.gz")) + (uri "https://github.com/user-attachments/files/17976913/GraphAligner.tar.gz") (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "1z1rxvl2pmiqbh670phkx7vma36w90ylp27wyadlbzf32pa2cpdn")))) + (base32 "1gs6jds4lazljb1s7s8f1vp0l4j8jvqy6qhb9sck7x66z8157ndm")))) (build-system gnu-build-system) (arguments (list @@ -1924,6 +1923,8 @@ The path-guided stochastic gradient descent based 1D sort implemented in (string-append "-I" (search-input-directory inputs "/include/concurrentqueue"))) (("^JEMALLOCFLAGS.*") "JEMALLOCFLAGS= `pkg-config --libs jemalloc`\n") + (("`pkg-config --cflags zlib`/bamtools") + (string-append "-I " (search-input-directory inputs "include/bamtools"))) ;; No need to build statically. (("-Wl,-Bstatic") "") (("-static-libstdc\\+\\+") "")))) @@ -1943,7 +1944,8 @@ The path-guided stochastic gradient descent based 1D sort implemented in pkg-config sparsehash)) (inputs - (list boost + (list bamtools + boost concurrentqueue jemalloc libdivsufsort |