aboutsummaryrefslogtreecommitdiff
path: root/gn
diff options
context:
space:
mode:
authorEfraim Flashner2023-09-26 17:11:58 +0300
committerEfraim Flashner2023-09-26 17:11:58 +0300
commit29633fd3a8bafce405bba487802cd3720e642d11 (patch)
treef511ecd634018e6b7266bdfca28e62567dc2e6a4 /gn
parent0d8ed9f6c2ca7804a73028c947db0a2a6a61e7cb (diff)
downloadguix-bioinformatics-29633fd3a8bafce405bba487802cd3720e642d11.tar.gz
pggb: Add missing inputs
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/bioinformatics.scm8
1 files changed, 6 insertions, 2 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 535018b..9de6ad8 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -2717,7 +2717,8 @@ multiple sequence alignment.")
'#$(map (lambda (label)
(or (this-package-input (string-append label "-hwcaps"))
(this-package-input label)))
- (list "bcftools"
+ (list "bc"
+ "bcftools"
"bedtools"
"gfaffix"
"htslib"
@@ -2735,6 +2736,7 @@ multiple sequence alignment.")
"samtools"
"seqwish"
"smoothxg"
+ "time"
"vcfbub"
"vcflib"
"vg"
@@ -2752,7 +2754,8 @@ multiple sequence alignment.")
(("/usr/local/bin/nucmer2vcf.R")
(string-append out "/bin/nucmer2vcf.R")))))))))
(inputs
- (list bcftools
+ (list bc
+ bcftools
bedtools
gfaffix
guile-3.0 ; for wrap-script
@@ -2772,6 +2775,7 @@ multiple sequence alignment.")
samtools
seqwish
smoothxg
+ time
vcfbub
vcflib
vg