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authorPjotr Prins2022-12-23 13:45:09 -0600
committerPjotr Prins2022-12-23 13:45:09 -0600
commit256a8af21602d23da0e05ef154789b3cef88c32d (patch)
treef75fc8d98221779218e34f6af93b5b057288b3d3 /gn
parentf7293193cbc5f58a74d5f38fe91e4774c7554635 (diff)
downloadguix-bioinformatics-256a8af21602d23da0e05ef154789b3cef88c32d.tar.gz
Disable pingouin tests
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/genenetwork.scm12
1 files changed, 10 insertions, 2 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index f0d1f09..49af8da 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -43,9 +43,7 @@
#:use-module (gnu packages statistics)
#:use-module (gnu packages textutils)
#:use-module (gnu packages version-control)
- ; #:use-module (gnu packages vim)
#:use-module (gnu packages web)
- ; #:use-module (gnu packages wget)
#:use-module (gnu packages xml)
#:use-module (gn packages bioinformatics)
#:use-module (gn packages crates-io)
@@ -103,6 +101,15 @@
(description "Reimplementation of genenetwork/QTLReaper in Rust")
(license #f))))
+; Tests on the upstream python-pengouin package are broken. So, we
+; create this temporary workaround.
+(define python-pingouin-without-tests
+ (package
+ (inherit python-pingouin)
+ (arguments
+ (substitute-keyword-arguments (package-arguments python-pingouin)
+ ((#:tests? _ #f) #f)))))
+
(define-public genenetwork3
(let ((commit "e781996b952bc1ff9d9cd7703cb5e37e2a282162"))
(package
@@ -142,6 +149,7 @@
python-numpy
python-pandas
;; python-pingouin << build failing
+ python-pingouin-without-tests
python-plotly
python-scikit-learn
python-pymonad