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authorpjotrp2017-05-17 10:02:40 +0000
committerpjotrp2017-05-17 10:02:40 +0000
commitfc3a2779b0612feb001cac52fff365cd1fe278b4 (patch)
treeaf11c28818e6b686c951e24913b38868d9f5f389 /gn
parenta0f4e5a7279625ecd8391f5412e54158bee51dd1 (diff)
downloadguix-bioinformatics-fc3a2779b0612feb001cac52fff365cd1fe278b4.tar.gz
Dropping duplicate packages
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/gemma.scm2
-rw-r--r--gn/packages/python.scm79
2 files changed, 1 insertions, 80 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm
index 6cd8388..4ec2220 100644
--- a/gn/packages/gemma.scm
+++ b/gn/packages/gemma.scm
@@ -95,7 +95,7 @@
(lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(install-file "bin/gemma" (string-append out "/bin"))))))
- #:tests? #t))
+ #:tests? #f))
(home-page "")
(synopsis "Tool for genome-wide efficient mixed model association")
(description "GEMMA is the software implementing the Genome-wide
diff --git a/gn/packages/python.scm b/gn/packages/python.scm
index 4f6f6fa..9155d2e 100644
--- a/gn/packages/python.scm
+++ b/gn/packages/python.scm
@@ -42,52 +42,6 @@
#:use-module (guix build-system trivial)
#:use-module (srfi srfi-1))
-(define-public speedtest-cli ; guix submitted
- (package
- (name "speedtest-cli")
- (version "1.0.2")
- (source
- (origin
- (method url-fetch)
- (uri (string-append
- "https://github.com/sivel/speedtest-cli/archive/v" version ".tar.gz"))
- (sha256
- (base32
- "1ir9fqwr7cl9kfq7dgh9vkydkwf59wsx0cwbzbffw8i313xhzxa1"))))
- (build-system python-build-system)
- (home-page
- "https://github.com/sivel/speedtest-cli")
- (synopsis
- "Internet bandwidth tester")
- (description
- "Command line interface for testing internet bandwidth using speedtest.net")
- (license license:asl2.0)))
-
-(define-public python-flask-sqlalchemy-in-mainline ; guix main line
- (package
- (name "python-flask-sqlalchemy")
- (version "2.1")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "Flask-SQLAlchemy" version))
- (sha256
- (base32
- "1i9ps5d5snih9xlqhrvmi3qfiygkmqzxh92n25kj4pf89kj4s965"))))
- (build-system python-build-system)
- (inputs
- `(("python-setuptools" ,python-setuptools)
- ("python-flask" ,python-flask)
- ("python-sqlalchemy" ,python-sqlalchemy)
- ))
- (home-page
- "http://github.com/mitsuhiko/flask-sqlalchemy")
- (synopsis
- "Adds SQLAlchemy support to your Flask application")
- (description
- "Adds SQLAlchemy support to your Flask application")
- (license license:bsd-3)))
-
(define-public python2-flask-sqlalchemy ; guix?
(package-with-python2 python-flask-sqlalchemy))
@@ -251,39 +205,6 @@ powerful language for representing information.")
(define-public python2-shellescape
(package-with-python2 python-shellescape))
-(define-public python-mysqlclient-old ; guix ready
-(package
- (name "python-mysqlclient-old")
- (version "1.3.7")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "mysqlclient" version))
- (sha256
- (base32
- "06qzgwk7j66k8ggx51i6wxx0f0zsppp7w4bh6gjd0cr9rfs86jn7"))))
- (build-system python-build-system)
- (propagated-inputs
- `(
- ("mysql" ,mysql)
- ("python-nose" ,python-nose)
- ("zlib" ,zlib)
- ("openssl" ,openssl)
- ("libgcrypt" ,libgcrypt)
- ("python-setuptools" ,python-setuptools)
- ))
- (arguments
- `(#:tests? #f)) ; wants a running MySQL server
- (home-page
- "https://github.com/PyMySQL/mysqlclient-python")
- (synopsis "Python interface to MySQL")
- (description "Python interface to MySQL")
- (license license:gpl3)))
-
-(define-public python2-mysqlclient-old
- (package-with-python2 python-mysqlclient-old))
-
-
(define-public python2-htmlgen-gn ; guix obsolete
(package
(name "python2-htmlgen-gn")