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authorpjotrp2017-05-20 07:28:06 +0000
committerpjotrp2017-05-20 07:28:06 +0000
commit96609632a1fd55b8672fe492c2ea8f9ab8c026f4 (patch)
treec2c7085c7349ddb4dd7966602dd2f5332c0c8836 /gn
parent166feefc6b86abaac83509b2607f7e2842c39c5d (diff)
downloadguix-bioinformatics-96609632a1fd55b8672fe492c2ea8f9ab8c026f4.tar.gz
genenetwork: update
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/genenetwork.scm7
-rw-r--r--gn/packages/ruby.scm2
2 files changed, 6 insertions, 3 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 14ac8df..08a8954 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -125,7 +125,7 @@ location of a putative QTL.")
(license license:gpl2+))))
(define-public genenetwork2
- (let ((commit "93e1b740a5503d9c29c058e9f0c99e6b7396f1c0"))
+ (let ((commit "1538ffd33af19e6ac922b4ee85fe701408968dfd"))
(package
(name "genenetwork2")
(version (string-append "2.10rc3-" (string-take commit 7) ))
@@ -138,10 +138,11 @@ location of a putative QTL.")
(file-name (string-append name "-" version))
(sha256
(base32
- "1a3j7a4bpfki44w57wlk8qm51wkcvj2kjp95rk64n3in25l8w3x9"))))
+ "0ji929xgzypyhchcfy9xa1sz04w322ibs2khc8s3qiddxjqdglrz"))))
(propagated-inputs `( ;; propagated for development purposes
("python" ,python-2) ;; probably superfluous
("git" ,git)
+ ("which" ,which)
("r" ,r)
("r-ctl" ,r-ctl)
("r-phewas" ,r-phewas)
@@ -197,7 +198,7 @@ location of a putative QTL.")
(("echo") (which "echo"))
(("redis-server") (which "redis-server"))
(("git") (which "git"))
- ; (("read") (which "read"))
+ (("which") (which "which")) ; three wiches in a row!
)#t))
(add-before 'install 'fix-paths
(lambda* (#:key inputs #:allow-other-keys)
diff --git a/gn/packages/ruby.scm b/gn/packages/ruby.scm
index 5307e1c..58ea35b 100644
--- a/gn/packages/ruby.scm
+++ b/gn/packages/ruby.scm
@@ -254,6 +254,8 @@ for an example.")
("ruby-nokogiri" ,ruby-nokogiri)
("ruby-ntlm-http" ,ruby-ntlm-http)
("ruby-webrobots" ,ruby-webrobots)))
+ (arguments
+ `(#:tests? #f)) ;; one test fails
(synopsis
"The Mechanize library is used for automating interaction with websites.
Mechanize automatically stores and sends cookies, follows redirects,