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authorEfraim Flashner2020-01-16 02:08:02 -0600
committerEfraim Flashner2020-01-16 02:08:02 -0600
commit5a69fb0666a2bf53b13ab9490b3ed44e5dc944b4 (patch)
tree0a714af0ac5c33aaed8b312230118636bdec63ca /gn
parent15b6a4ac8c87592327ba953ea3912bf5a344d439 (diff)
downloadguix-bioinformatics-5a69fb0666a2bf53b13ab9490b3ed44e5dc944b4.tar.gz
gn: Add GN1 service.
Diffstat (limited to 'gn')
-rw-r--r--gn/services/genenetwork.scm58
1 files changed, 58 insertions, 0 deletions
diff --git a/gn/services/genenetwork.scm b/gn/services/genenetwork.scm
new file mode 100644
index 0000000..0978cd2
--- /dev/null
+++ b/gn/services/genenetwork.scm
@@ -0,0 +1,58 @@
+(define-module (gn services genenetwork))
+
+(use-modules (gnu)
+ (gn packages genenetwork)
+ (gn packages python)
+ (gn packages web))
+(use-service-modules web)
+(use-package-modules python)
+
+(define %mod-python-path
+ (file-append mod-python "/lib/python2.7/site-packages"))
+
+(operating-system
+ (host-name "genenetwork")
+ (timezone "Etc/UTC")
+ (locale "en_US.utf8")
+
+ (bootloader (bootloader-configuration
+ (bootloader grub-bootloader)
+ (target "does-not-matter")))
+ (file-systems %base-file-systems)
+ ;; No firmware for VMs
+ (firmware '())
+
+ (packages (cons* python-2
+ mod-python
+ python2-qtlreaper
+ python2-htmlgen-gn
+ python2-json-GN1
+ python2-piddle
+ python2-pyx-GN1
+ python2-pyxlwriter
+ python2-svg-GN1
+ %base-packages))
+
+ (services (list (service httpd-service-type
+ (httpd-configuration
+ (config
+ (httpd-config-file
+ (server-name "www.genenetwork.org")
+ (document-root (file-append genenetwork "/web"))
+ (listen '("8811"))
+ (modules (cons*
+ (httpd-module
+ (name "python_module")
+ (file (file-append mod-python "/modules/mod_python.so")))
+ %default-httpd-modules))
+ (extra-config (list "\
+PythonPath \"sys.path+['" %mod-python-path "', '" (file-append genenetwork "/web/webqtl") "']\"
+<Directory " (file-append genenetwork "/web/webqtl") ">
+ SetHandler python-program
+ PythonHandler mod_python.publisher
+ PythonAutoReload Off
+</Directory>
+<Location /mpinfo>
+ SetHandler python-program
+ PythonHandler mod_python.testhandler
+</Location>")))))))))