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authorpjotrp2017-01-20 13:09:26 +0000
committerpjotrp2017-01-20 13:09:26 +0000
commit2b219d0f250019c86aa1ff2466d511655bdb4daa (patch)
treebce21214a709cc005b292ddc1e7879b428b79cfc /gn
parente9a935845768ed2ab84810884a2ad516a1f5933a (diff)
downloadguix-bioinformatics-2b219d0f250019c86aa1ff2466d511655bdb4daa.tar.gz
Sambamba: switched to guix makefile
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/bioinformatics.scm7
1 files changed, 3 insertions, 4 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index d524ea2..c1c1a2c 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -921,7 +921,7 @@ association studies (GWAS).")
(license license:gpl3))))
(define-public sambamba
- (let ((commit "c6f52cc7f71d2cdb0bafe3bb911042c6e2ef2475"))
+ (let ((commit "7518a1ff0f07f2013601c05564e1ad1256b479da"))
(package
(name "sambamba")
(version (string-append "0.6.5-" (string-take commit 7)))
@@ -934,7 +934,7 @@ association studies (GWAS).")
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
- "0ljpiamx4fabm1ha4swfdghl5slwg530y0vzvd9h170shj6gaj91"))))
+ "14wpj05hycz9fqrzc2mqx5vl4h42kx1sms9dqpapz46vwc2d0zz3"))))
(build-system gnu-build-system)
(native-inputs
`(("ldc" ,ldc)
@@ -975,7 +975,6 @@ association studies (GWAS).")
(base32 "1m8hi1n7x0ri4l6s9i0x6jg4z4v94xrfdzp7mbizdipfag0m17g3"))))))
(arguments
`(#:tests? #f ; no tests available
- #:make-flags (list "-f" "Makefile.guix")
#:phases
(modify-phases %standard-phases
(delete 'configure)
@@ -997,7 +996,7 @@ association studies (GWAS).")
(replace
'build
(lambda* (#:key inputs make-flags #:allow-other-keys)
- (zero? (system* "make" "sambamba-ldmd2-64" "CC=gcc" "D_COMPILER=ldc2"
+ (zero? (system* "make" "-f" "Makefile.guix" "sambamba-ldmd2" "CC=gcc" "D_COMPILER=ldc2"
(string-append "LDC_LIB_PATH="
(assoc-ref inputs "ldc")
"/lib")))))