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authorEfraim Flashner2019-07-08 08:02:00 -0500
committerEfraim Flashner2019-07-09 00:52:09 -0500
commitec1280b48c11762699ffa84c8789a4dab2b56b4a (patch)
treec75072db54042b772afe2821c1aa762623a15368 /gn
parent3a2654b63743fc23fa45ba1d2c85e61acc9d1c03 (diff)
downloadguix-bioinformatics-ec1280b48c11762699ffa84c8789a4dab2b56b4a.tar.gz
gn: suitesparse-3.5.0: Build with metis.
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/maths.scm28
1 files changed, 15 insertions, 13 deletions
diff --git a/gn/packages/maths.scm b/gn/packages/maths.scm
index d696176..320d83c 100644
--- a/gn/packages/maths.scm
+++ b/gn/packages/maths.scm
@@ -97,19 +97,13 @@
(substitute-keyword-arguments (package-arguments suitesparse)
((#:phases phases)
`(modify-phases ,phases
- (add-after 'unpack 'build-without-metis
- (lambda _
- (substitute* "UFconfig/UFconfig.mk"
- (("CHOLMOD_CONFIG = ")
- "CHOLMOD_CONFIG = -DNPARTITION")
- (("SPQR_CONFIG = ")
- "SPQR_CONFIG = -DNPARTITION")
- (("METIS = ../../metis-4.0/libmetis.a")
- "METIS =")
- (("METIS_PATH = .*")
- "METIS_PATH = \n"))
- (substitute* "Makefile"
- (("\\( .*CHOLMOD .*") "\n"))
+ (add-after 'unpack 'unpack-metis
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let ((metis (assoc-ref inputs "metis-source")))
+ (invoke "tar" "xvf" metis)
+ ;; backported from 4.0.3
+ (substitute* (find-files "metis-4.0")
+ (("log2") "ilog2")))
#t))
(add-after 'unpack 'fix-source
(lambda _
@@ -125,6 +119,14 @@
(mkdir-p (string-append out "/lib"))
(mkdir-p (string-append out "/include")))
#t))))))
+ (native-inputs
+ `(("metis-source" ,(origin
+ (method url-fetch)
+ (uri "http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD/metis-4.0.1.tar.gz")
+ (sha256
+ (base32
+ "0lnkdfdrmmyy67h356bgdc06acvmcr26av9kdvqlws12znrr5iv0"))))
+ ,@(package-native-inputs suitesparse)))
(inputs
`(,@(fold alist-delete (package-inputs suitesparse)
'("metis"))))))