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authorPjotr Prins2015-12-28 16:11:31 +0300
committerPjotr Prins2015-12-28 16:11:31 +0300
commitbd5313e5b3ee79009a4a23772948cad98a168889 (patch)
treeb3facf3866cf1f79d45325a36b7e020b90abe278 /gn
parent1ec0997ff97aa440b77b1c5f0c7d70eca5d08252 (diff)
downloadguix-bioinformatics-bd5313e5b3ee79009a4a23772948cad98a168889.tar.gz
Adding R packages for lmmlite
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/statistics.scm72
1 files changed, 65 insertions, 7 deletions
diff --git a/gn/packages/statistics.scm b/gn/packages/statistics.scm
index ee990de..5a81602 100644
--- a/gn/packages/statistics.scm
+++ b/gn/packages/statistics.scm
@@ -55,8 +55,9 @@
(propagated-inputs
`(("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)
- ("r-stats" ,r-stats)
- ("r-utils" ,r-utils)))
+ ;; ("r-stats" ,r-stats)
+ ;; ("r-utils" ,r-utils)
+ ))
(home-page "http://eigen.tuxfamily.org")
(synopsis
"'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library")
@@ -80,15 +81,72 @@
(build-system r-build-system)
(propagated-inputs
`(("r-graphics" ,r-graphics)
- ("r-grid" ,r-grid)
+ ;; ("r-grid" ,r-grid)
("r-lattice" ,r-lattice)
- ("r-methods" ,r-methods)
- ("r-stats" ,r-stats)
- ("r-utils" ,r-utils)))
+ ;; ("r-methods" ,r-methods)
+ ;; ("r-stats" ,r-stats)
+ ;;("r-utils" ,r-utils)
+ ))
(home-page
"http://Matrix.R-forge.R-project.org/")
(synopsis
"Sparse and Dense Matrix Classes and Methods")
(description
"Classes and methods for dense and sparse matrices and operations on them using 'LAPACK' and 'SuiteSparse'.")
- (license gpl2+)))
+ (license license:gpl2+)))
+
+(define-public r-graphics
+(package
+ (name "r-graphics")
+ (version "2.0-13")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "RGraphics" version))
+ (sha256
+ (base32
+ "10c6wiqh074bmbg2gwdscwp5kj8afs152ipv0byyqw5n2r8fw0w1"))))
+ (properties `((upstream-name . "RGraphics")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(;; ("r-datasets" ,r-datasets)
+ ("r-ggplot2" ,r-ggplot2)
+ ;; ("r-graphics" ,r-graphics)
+ ;; ("r-grdevices" ,r-grdevices)
+ ;; ("r-grid" ,r-grid)
+ ("r-lattice" ,r-lattice)
+ ;; ("r-methods" ,r-methods)
+ ;; ("r-stats" ,r-stats)
+ ))
+ (home-page
+ "http://www.stat.auckland.ac.nz/~paul/RG2e/index.html")
+ (synopsis
+ "Data and Functions from the Book R Graphics, Second Edition")
+ (description
+ "Data and Functions from the book R Graphics, Second Edition. There is a function to produce each figure in the book, plus several functions, classes, and methods defined in Chapter 8.")
+ (license license:gpl2+)))
+
+(define-public r-lmmlite
+ (package
+ (name "r-lmmlite")
+ (version "0.1-9")
+ (source (origin
+ ;; We use the git reference, because there's CRAN package
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/kbroman/lmmlite.git")
+ (commit "5b833d5")))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32
+ "0bnppjy96xiadrsrc9dp8y6wvdwnkfa930n7acrp0mqm4qywl2wl"))))
+ (build-system r-build-system)
+ (inputs
+ `(("r-rcppeigen" ,r-rcppeigen)))
+ ;; (propagated-inputs
+ ;; `(("ruby-nokogiri" ,ruby-nokogiri)))
+ (synopsis "R/lmmlite")
+ (description
+ "R/lmmlite")
+ (home-page "https://github.com/kbroman/")
+ (license license:asl2.0)))