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authorpjotrp2017-02-23 14:37:42 +0000
committerpjotrp2017-02-23 14:37:42 +0000
commit76dae6bcf47a1a127f53b43fc96d73ed5048c5a9 (patch)
tree635b27c884659cf992e7131b8e991b245a0d381b /gn
parentb46711e9a22e6ba34f8a375d498a0d15296e9db6 (diff)
downloadguix-bioinformatics-76dae6bcf47a1a127f53b43fc96d73ed5048c5a9.tar.gz
shunit2 package
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/bioinformatics.scm1
-rw-r--r--gn/packages/shell.scm47
2 files changed, 48 insertions, 0 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 2dcaf62..0533371 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -940,6 +940,7 @@ association studies (GWAS).")
(native-inputs
`(("ldc" ,ldc)
("lz4" ,lz4)
+ ("shunit2" ,shunit2)
("zlib" ,zlib)
("coreutils" ,coreutils) ; for env
("perl" ,perl) ; Needed for htslib
diff --git a/gn/packages/shell.scm b/gn/packages/shell.scm
new file mode 100644
index 0000000..185ac17
--- /dev/null
+++ b/gn/packages/shell.scm
@@ -0,0 +1,47 @@
+(define-module (gn packages shell)
+ #:use-module (guix packages)
+ #:use-module (guix download)
+ #:use-module (guix build-system gnu)
+ #:use-module (gnu packages)
+ #:use-module (guix git-download)
+ #:use-module ((guix licenses) #:prefix license:)
+ )
+
+(define-public shunit2
+ (let ((commit "60dd60bcd1573befe38465010263ab242e55811d"))
+ (package
+ (name "shunit2")
+ (version (string-append "2.1.7-" (string-take commit 7)))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/kward/shunit2.git")
+ (commit commit)))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32 "11savxc6qliqv25kv59qak6j7syjv95hbpmq1szn1mzn32g2gc25"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(
+ #:tests? #f ;; no tests-suite
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (delete 'build)
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin")))
+ (write (string-append "****************" bin))
+ (copy-file "2.1/src/shunit2" (string-append bin "/shunit2"))
+ #t
+ ))))
+ ))
+ (home-page "https://code.google.com/archive/p/shunit2/")
+ (synopsis "xUnit based unit testing for Unix shell scripts")
+ (description
+ "shUnit2 is a xUnit unit test framework for Bourne based shell
+scripts, and it is designed to work in a similar manner to JUnit,
+PyUnit, etc. If you have ever had the desire to write a unit test for
+a shell script, shUnit2 can do the job.")
+ (license license:lgpl2.0))))