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authorEfraim Flashner2019-07-04 09:19:53 -0500
committerEfraim Flashner2019-07-04 09:19:53 -0500
commit534d4edbbe1efcdf76262df436423dccb707ee1e (patch)
tree7f6dedde5d74d755ba2842bf2d0d8a42e7bb8f6f /gn
parentd88288b63ba5c78d0af762fe72be2f4fd6315350 (diff)
downloadguix-bioinformatics-534d4edbbe1efcdf76262df436423dccb707ee1e.tar.gz
gn: Add GN1 thirdparty packages.
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/python24.scm199
1 files changed, 199 insertions, 0 deletions
diff --git a/gn/packages/python24.scm b/gn/packages/python24.scm
index 5bceb2d..a44597f 100644
--- a/gn/packages/python24.scm
+++ b/gn/packages/python24.scm
@@ -394,3 +394,202 @@ strings, records, or objects using the same basic infrastructure and syntax.")
execution of python code on SMP (systems with multiple processors or cores) and
clusters (computers connected via network).")
(license license:bsd-3)))
+
+(define GN1-thirdparty-sources
+ (origin
+ (method url-fetch/tarbomb)
+ ;; ipfs get QmTPwYT2pehdxdG1TiHEzVzLgbeuhJ4utXShuz3twA84AB
+ (uri "file:///gnu/store/p33a2sh3x2nhiiphdw9nly80njg6p8fi-thirdparty.tgz")
+ (file-name "GN1-thirdparty")
+ (sha256
+ (base32
+ "0nnp6g412hjfrcn3k2yrfb14sxv06k0149whc7qmv678nyj5zhfa"))))
+
+(define-public python24-json-GN1
+ (package
+ (name "python24-json-GN1")
+ (version "GN1")
+ (source GN1-thirdparty-sources)
+ (build-system python-build-system)
+ (arguments
+ `(#:python ,python-2.4
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'build)
+ (delete 'check)
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (sitedir (string-append out "/lib/python2.4/site-packages/json/")))
+ (mkdir-p sitedir)
+ (copy-recursively "thirdparty/json" sitedir)
+ #t))))))
+ (home-page "")
+ (synopsis "")
+ (description "")
+ (license license:lgpl2.1+)))
+
+(define-public python24-svg-GN1
+ (package
+ (name "python24-svg-GN1")
+ (version "1.0")
+ (source GN1-thirdparty-sources)
+ (build-system python-build-system)
+ (arguments
+ `(#:python ,python-2.4
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'build)
+ (delete 'check)
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (sitedir (string-append out "/lib/python2.4/site-packages/svg/")))
+ (mkdir-p sitedir)
+ (copy-recursively "thirdparty/svg" sitedir)
+ #t))))))
+ (home-page "")
+ (synopsis "")
+ (description "")
+ (license license:bsd-4)))
+
+(define-public python24-htmlgen-GN1
+ (package
+ (name "python24-htmlgen-GN1")
+ (version "2.5")
+ (source GN1-thirdparty-sources)
+ (build-system python-build-system)
+ (arguments
+ `(#:python ,python-2.4
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'build)
+ (delete 'check)
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (sitedir (string-append out "/lib/python2.4/site-packages/htmlgen/")))
+ (mkdir-p sitedir)
+ (copy-recursively "thirdparty/htmlgen" sitedir)
+ #t))))))
+ (home-page "")
+ (synopsis "")
+ (description "")
+ (license license:bsd-2))) ; I'm not actually sure, checked HTMLgen.py
+
+(define-public python24-pyx-GN1
+ (package
+ (name "python24-pyx-GN1")
+ (version "0.8")
+ (source GN1-thirdparty-sources)
+ (build-system python-build-system)
+ (arguments
+ `(#:python ,python-2.4
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'build)
+ (delete 'check)
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (sitedir (string-append out "/lib/python2.4/site-packages/pyx/")))
+ (mkdir-p sitedir)
+ (copy-recursively "thirdparty/pyx" sitedir)
+ #t))))))
+ (home-page "")
+ (synopsis "")
+ (description "")
+ (license license:gpl2+)))
+
+(define-public python24-pyxlwriter-GN1
+ (package
+ (name "python24-pyxlwriter-GN1")
+ (version "0.4a3")
+ (source GN1-thirdparty-sources)
+ (build-system python-build-system)
+ (arguments
+ `(#:python ,python-2.4
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'build)
+ (delete 'check)
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (sitedir (string-append out "/lib/python2.4/site-packages/pyXLWriter/")))
+ (mkdir-p sitedir)
+ (copy-recursively "thirdparty/pyXLWriter" sitedir)
+ #t))))))
+ (home-page "")
+ (synopsis "")
+ (description "")
+ (license license:lgpl2.1+)))
+
+(define-public python24-pp-GN1
+ (package
+ (name "python24-pp-GN1")
+ (version "1.5.7")
+ (source GN1-thirdparty-sources)
+ (build-system python-build-system)
+ (arguments
+ `(#:python ,python-2.4
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'change-directory
+ (lambda _
+ (chdir "thirdparty/pp-1.5.7") #t)))))
+ (native-inputs `(("python24-setuptools" ,python24-setuptools)))
+ (home-page "")
+ (synopsis "")
+ (description "")
+ (license license:bsd-3)))
+
+(define-public python24-numarray-GN1
+ (package
+ (name "python24-numarray-GN1")
+ (version "1.5.2")
+ (source GN1-thirdparty-sources)
+ (build-system python-build-system)
+ (arguments
+ `(#:python ,python-2.4
+ #:phases
+ (modify-phases %standard-phases
+ (replace 'build
+ (lambda _
+ (invoke "python" "setup.py" "config" "build"
+ "--gencode" "--use_lapack")))
+ (add-after 'unpack 'find-lapack-and-openblas
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let ((lapack (assoc-ref inputs "lapack"))
+ (blas (assoc-ref inputs "openblas")))
+ (substitute* "cfg_packages.py"
+ (("lapack_libs = .*'m']")
+ "lapack_libs = ['lapack', 'openblas', 'm']\n")
+ (("lapack_dirs = .*")
+ (string-append "lapack_dirs = ['"
+ lapack "/lib', '" blas "/lib']\n"))
+ (("lapack_include_dirs = .*")
+ (string-append "lapack_include_dirs = ['"
+ lapack "/include', '" blas "/include']\n")))
+ #t)))
+ (add-after 'unpack 'change-directory
+ (lambda _
+ (chdir "thirdparty/numarray-1.5.2")
+ (for-each make-file-writable (find-files "."))
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out")))
+ (invoke "python" "setup.py" "config"
+ "install" "--use_lapack"
+ (string-append "--prefix=" out))))))
+ #:tests? #f)) ; no test target
+ (native-inputs
+ `(("python24-setuptools" ,python24-setuptools)))
+ (inputs
+ `(("lapack" ,lapack)
+ ("openblas" ,openblas)))
+ (home-page "")
+ (synopsis "")
+ (description "")
+ (license license:bsd-3)))