aboutsummaryrefslogtreecommitdiff
path: root/gn
diff options
context:
space:
mode:
authorpjotrp2017-09-12 03:45:39 +0000
committerpjotrp2017-09-12 03:45:39 +0000
commit25ea4dc46c0acdba0114bdcbdb5d63b0cac8bb44 (patch)
treec1b65610ff69dd5264666ff2b03d22f1c9325626 /gn
parentda8185eedd20c3ba34d62d3134db559db8fed0f4 (diff)
downloadguix-bioinformatics-25ea4dc46c0acdba0114bdcbdb5d63b0cac8bb44.tar.gz
YAJ package start
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/yaj.scm91
1 files changed, 91 insertions, 0 deletions
diff --git a/gn/packages/yaj.scm b/gn/packages/yaj.scm
new file mode 100644
index 0000000..90959c7
--- /dev/null
+++ b/gn/packages/yaj.scm
@@ -0,0 +1,91 @@
+(define-module (gn packages yaj)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix packages)
+ #:use-module (guix utils)
+ #:use-module (guix download)
+ #:use-module (guix git-download)
+ #:use-module (guix build-system gnu)
+ #:use-module (guix build-system cmake)
+ #:use-module (guix build-system perl)
+ #:use-module (guix build-system python)
+ ;; #:use-module (guix build-system ruby)
+ #:use-module (guix build-system r)
+ #:use-module (guix build-system trivial)
+ #:use-module (gnu packages)
+ #:use-module (gnu packages algebra)
+ #:use-module (gnu packages base)
+ #:use-module (gnu packages bioinformatics)
+ #:use-module (gnu packages boost)
+ #:use-module (gnu packages compression)
+ #:use-module (gnu packages databases)
+ #:use-module (gnu packages cpio)
+ #:use-module (gnu packages file)
+ #:use-module (gnu packages gcc)
+ #:use-module (gnu packages graphviz)
+ #:use-module (gnu packages java)
+ #:use-module (gnu packages linux)
+ #:use-module (gnu packages ldc)
+ #:use-module (gnu packages machine-learning)
+ #:use-module (gnu packages maths)
+ #:use-module (gnu packages ncurses)
+ #:use-module (gnu packages perl)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages popt)
+ #:use-module (gnu packages protobuf)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages statistics)
+ #:use-module (gnu packages tbb)
+ #:use-module (gnu packages textutils)
+ #:use-module (gnu packages vim)
+ #:use-module (gnu packages web)
+ #:use-module (gnu packages xml)
+ #:use-module (gnu packages bootstrap)
+ #:use-module (gnu packages version-control)
+ #:use-module (gn packages bioinformatics)
+ #:use-module (gn packages gemma)
+ #:use-module (gn packages javascript)
+ #:use-module (gn packages phewas)
+ #:use-module (gn packages python)
+ #:use-module (gn packages statistics)
+ #:use-module (srfi srfi-1))
+
+
+(define-public yaj
+ (let ((md5 "93e745e9c"))
+ (package
+ (name "yaj")
+ (version "0.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri "http://files.genenetwork.org/raw_database/md5sum.txt") ; any old file
+ (file-name (string-append name "-" md5))
+ (sha256
+ (base32 "1cnkiwid4h0nnf93rm647ji9vhfzjl23arp1xj374la7mmic9jqs"))))
+ (build-system trivial-build-system)
+ (native-inputs `(("unzip" ,unzip)
+ ("source" ,source)))
+ (inputs `(("python" ,python)))
+ ; ("python2-flask" ,python2-flask)
+ ; ("python2-jinja2" ,python2-jinja2)
+ ; ("python2-mak" ,python2-mak)
+ ; ))
+
+ ; (arguments
+ ; `(#:modules ((guix build utils))
+ ; #:python ,python-2
+ ; #:builder #f))
+ (arguments
+ `(#:modules ((guix build utils))
+ #:builder (begin
+ (use-modules (guix build utils))
+ (let ((source (assoc-ref %build-inputs "source"))
+ (unzip (string-append (assoc-ref %build-inputs "unzip") "/bin/unzip"))
+ )
+ (and (mkdir "db")
+ (zero? (system* unzip source "-d" "db"))
+ (chdir "db"))))))
+ (home-page "http://github.com/pjotrp/yaj/")
+ (synopsis "Yet another journal")
+ (description "YAJ.")
+ (license license:agpl3+))))