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authorEfraim Flashner2021-07-12 15:25:43 +0300
committerEfraim Flashner2021-07-12 15:25:43 +0300
commiteecc939c493e1d5d0aa11c2831ce847be47a1c6f (patch)
tree1ac7cfe4e58c7af881dbc5dd1ba4af34ac64b4c9 /gn
parent183b6e2ac267e1ac171763e80a3a5355d9fb91dd (diff)
downloadguix-bioinformatics-eecc939c493e1d5d0aa11c2831ce847be47a1c6f.tar.gz
gn: Add ccwl.
* gn/packages/ccwl.scm (ccwl): New variable.
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/ccwl.scm46
1 files changed, 46 insertions, 0 deletions
diff --git a/gn/packages/ccwl.scm b/gn/packages/ccwl.scm
new file mode 100644
index 0000000..6976143
--- /dev/null
+++ b/gn/packages/ccwl.scm
@@ -0,0 +1,46 @@
+(define-module (gn packages ccwl)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix packages)
+ #:use-module (guix utils)
+ #:use-module (guix download)
+ #:use-module (guix build-system gnu)
+ #:use-module (gnu packages bioinformatics)
+ #:use-module (gnu packages compression)
+ #:use-module (gnu packages graphviz)
+ #:use-module (gnu packages guile)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages skribilo))
+
+(define-public ccwl
+ (package
+ (name "ccwl")
+ (version "0.1.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/arunisaac/ccwl"
+ "/releases/download/v" version
+ "/ccwl-" version ".tar.lz"))
+ (sha256
+ (base32 "0zj8rsmh82ip9ngq65is3yfbpn9y0acil4llwrr4jw2fiyyji7x1"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:make-flags '("GUILE_AUTO_COMPILE=0"))) ;to prevent guild warnings
+ (propagated-inputs
+ `(("guile" ,guile-3.0)))
+ (native-inputs
+ `(("guile" ,guile-3.0)
+ ("lzip" ,lzip)
+ ("pkg-config" ,pkg-config)
+ ;; For the documentation:
+ ("cwltool" ,cwltool)
+ ("graphviz" ,graphviz)
+ ("skribilo" ,skribilo)))
+ (home-page "https://ccwl.systemreboot.net/")
+ (synopsis "Concise Common Workflow Language")
+ (description
+ "The @acronym{Concise Common Workflow Languager, ccwl} is a concise syntax
+to express CWL workflows. It is implemented as an @acronym{Embedded Domain
+Specific Language, EDSL} in the Scheme programming language, a minimalist
+dialect of the Lisp family of programming languages. @code{ccwl} is a compiler
+to generate CWL workflows from concise descriptions in ccwl.")
+ (license license:gpl3+)))