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| author | Pjotr Prins | 2015-09-18 13:57:31 +0900 |
|---|---|---|
| committer | Pjotr Prins | 2015-09-18 13:57:31 +0900 |
| commit | 8f66d31c13691d0d3086ffe16aca7e6a65d636cf (patch) | |
| tree | 8170a7b7aeb042164e297be855864978da0271d1 /gn | |
| parent | 2b5a7f5518eb0594c21fe087fd925eac8d68cf5e (diff) | |
| download | guix-bioinformatics-8f66d31c13691d0d3086ffe16aca7e6a65d636cf.tar.gz | |
cwl tools build
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/cwl.scm | 8 | ||||
| -rw-r--r-- | gn/packages/python.scm | 26 |
2 files changed, 33 insertions, 1 deletions
diff --git a/gn/packages/cwl.scm b/gn/packages/cwl.scm index 81c386f..0d31148 100644 --- a/gn/packages/cwl.scm +++ b/gn/packages/cwl.scm @@ -34,7 +34,10 @@ `(("python-schema-salad" ,python-schema-salad) )) (inputs - `(("python-setuptools" ,python-setuptools))) + `(("python-setuptools" ,python-setuptools) + ("python-pyparsing" ,python-pyparsing) + )) + (arguments `(#:tests? #f)) ;; No tests. (home-page "https://github.com/common-workflow-language/common-workflow-language") (synopsis @@ -68,6 +71,9 @@ (propagated-inputs `(("python-rdflib-4.2" ,python-rdflib-4.2) ("python-avro" ,python-avro) + ("python-pyyaml" ,python-pyyaml) + ("python-requests" ,python-requests) + ("python-shellescape" ,python-shellescape) )) (home-page "https://github.com/common-workflow-language/common-workflow-language") diff --git a/gn/packages/python.scm b/gn/packages/python.scm index 1663d96..0228dae 100644 --- a/gn/packages/python.scm +++ b/gn/packages/python.scm @@ -127,3 +127,29 @@ powerful language for representing information.") (description "Avro is a serialization and RPC framework.") (license #f))) + +(define-public python-shellescape +(package + (name "python-shellescape") + (version "3.4.1") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/s/shellescape/shellescape-" + version + ".tar.gz")) + (sha256 + (base32 + "0n5ky1b2vw2y0d4xl3qybyp2rk0gq5frjs8nr8ak6mgj2fyb4676")))) + (build-system python-build-system) + (inputs + `(("python-setuptools" ,python-setuptools))) + (home-page + "https://github.com/chrissimpkins/shellescape") + (synopsis + "Shell escape a string to safely use it as a token in a shell command (backport of Python shlex.quote for Python versions 2.x & < 3.3)") + (description + "Shell escape a string to safely use it as a token in a shell command (backport of Python shlex.quote for Python versions 2.x & < 3.3)") + (license expat)) +) |