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| author | Muriithi Frederick Muriuki | 2018-06-21 18:50:23 +0300 |
|---|---|---|
| committer | Muriithi Frederick Muriuki | 2018-06-21 18:50:23 +0300 |
| commit | ed8342aae99e88b36459a85df7cc339a18b75591 (patch) | |
| tree | 71e286f2e0b3e023f49af845950063fe4a6fc5ff /gn | |
| parent | dbfa86d7ec182cdfcca003a991e4d87baf005791 (diff) | |
| download | guix-bioinformatics-ed8342aae99e88b36459a85df7cc339a18b75591.tar.gz | |
Add python-reaper
* gn/packages/genenetwork.scm (python-reaper): New package.
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/genenetwork.scm | 31 |
1 files changed, 30 insertions, 1 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index 56b5281..bba25c0 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -399,6 +399,34 @@ location of a putative QTL.") (license license:agpl3+)))) + +(define-public python-reaper + (let (;;(commit "b8db1fb0857bc76a5881aba980a912fc774389ff") + (commit "a873abe18e3a7469c9c700aba6454fee69b32686")) + (package + (name "python-reaper") + (version (string-append "0.0.1-" + (string-take commit 7))) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/fredmanglis/reaper.git") + (commit commit))) + (sha256 + (base32 + "140gzadz52dwfl2m1c8vwh6ckyl8q681w7rwfl1z1h8yw42nm2n7" + ;;"1mg4b6avf0fq8kjpxv3ag33ivsyrj0amhvna0kvyjj49aj1gmhr7" + ;; "0klgjra2qisfzs8mk0s8vzdr190l4n56xcm66dk0asqs7zswi8di" ;; default + )))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) + (home-page "https://github.com/fredmanglis/reaper") + (synopsis "Parser for .geno files") + (description "Parser for .geno files. It replaces the Python2 library +written in C") + (license license:agpl3+)))) + (define-public genenetwork3 (let (;; (commit "1538ffd33af19e6ac922b4ee85fe701408968dfd") (commit "5bff4f49dffb4ac982d36cd0d39e0a9ec6bc66e9")) @@ -446,7 +474,6 @@ location of a putative QTL.") ("javascript-qtip" ,javascript-cytoscape-qtip) ;; With Python3 support - ("python-wrapper" ,python-wrapper) ("gunicorn" ,gunicorn) ("python-rpy2" ,python-rpy2) ("python-flask" ,python-flask) @@ -454,11 +481,13 @@ location of a putative QTL.") ("python-numpy" ,python-numpy) ("python-redis" ,python-redis) ("python-scipy" ,python-scipy) + ("python-reaper" ,python-reaper) ("python-pyyaml" ,python-pyyaml) ("python-jinja2" ,python-jinja2) ("python-pandas" ,python-pandas) ("python-htmlgen" ,python-htmlgen) ("python-passlib" ,python-passlib) + ("python-wrapper" ,python-wrapper) ("python-requests" ,python-requests) ("python-cssselect" ,python-cssselect) ("python-sqlalchemy" ,python-sqlalchemy) |