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| author | Efraim Flashner | 2020-04-23 09:22:53 -0500 |
|---|---|---|
| committer | Efraim Flashner | 2020-04-23 09:23:11 -0500 |
| commit | c0c6263202917faf8af65d734724e2179db5e130 (patch) | |
| tree | 3805a33f5cce507e8583cf7e3f4b2d11ca6b67a2 /gn | |
| parent | e88085103b2736000339cbef7d3c60d4bf52e3b1 (diff) | |
| download | guix-bioinformatics-c0c6263202917faf8af65d734724e2179db5e130.tar.gz | |
gn: Fix ratspub python error.
We are using an older version of python-keras and tensorflow
and therefore need to backport the AUC optimizations from 2.3.1
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/ratspub.scm | 19 |
1 files changed, 17 insertions, 2 deletions
diff --git a/gn/packages/ratspub.scm b/gn/packages/ratspub.scm index 882a6bd..9dd9745 100644 --- a/gn/packages/ratspub.scm +++ b/gn/packages/ratspub.scm @@ -1,6 +1,7 @@ (define-module (gn packages ratspub) #:use-module ((guix licenses) #:prefix license:) #:use-module (guix utils) + #:use-module (gnu packages) #:use-module (guix packages) #:use-module (guix git-download) #:use-module (guix build-system python) @@ -25,7 +26,15 @@ (file-name (git-file-name name version)) (sha256 (base32 - "1ii3721mqd3dbpjkhqi7yqjd9bqcf0g19kdbb8265pmbfjjsg164")))) + "1ii3721mqd3dbpjkhqi7yqjd9bqcf0g19kdbb8265pmbfjjsg164")) + (modules '((guix build utils))) + (snippet + '(begin (substitute* "server.py" + ;; Keep the service running on port 4200 + (("4201") "4200") + ;; Backport to python-keras-2.2.4 + (("learning_rate") "lr") ) + #t)))) (build-system python-build-system) (arguments `(#:tests? #f ; no test suite @@ -130,11 +139,17 @@ Studies} catalog are also included in the search to better answer this question.") (license license:expat))) -;; We want a copy of python-keras without tests. +;; We want a copy of python-keras with the AUC optimizer backported. +;; We skip the tests because we "test in production". +;; That's a lie. The test suite just takes a long time to run. (define-public python-keras-for-ratspub (hidden-package (package (inherit python-keras) + (source + (origin + (inherit (package-source python-keras)) + (patches (search-patches "keras-auc-optimizer.patch")))) (arguments (substitute-keyword-arguments (package-arguments python-keras) ((#:phases phases) |