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| author | Pjotr Prins | 2019-09-05 04:57:37 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2019-09-05 04:57:37 -0500 |
| commit | bfca823761d383ed31aef16363760fea09074e4e (patch) | |
| tree | abdf974b45260bec84f31a6821340527f9069ded /gn | |
| parent | 96c20234e09648bf4990c96d46c0806281520dee (diff) | |
| download | guix-bioinformatics-bfca823761d383ed31aef16363760fea09074e4e.tar.gz | |
Fix genenetwork2
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/genenetwork.scm | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index 14243c2..27eb154 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -309,15 +309,15 @@ location of a putative QTL.") (add-before 'install 'fix-paths (lambda* (#:key inputs #:allow-other-keys) (let* ( - (datafiles (string-append (assoc-ref inputs "genenetwork2-files-small") "/share/genenetwork2")) + ; (datafiles (string-append (assoc-ref inputs "genenetwork2-files-small") "/share/genenetwork2")) (pylmmcmd (string-append (assoc-ref inputs "pylmm-gn2") "/bin/pylmm_redis")) (plink2cmd (string-append (assoc-ref inputs "plink-ng-gn") "/bin/plink2")) (gemmacmd (string-append (assoc-ref inputs "gemma") "/bin/gemma")) ) (substitute* '("etc/default_settings.py") - (("^GENENETWORK_FILES +=.*") (string-append "GENENETWORK_FILES = \"" datafiles "\"\n" )) - (("^PYLMM_COMMAND =.*") (string-append "PYLMM_COMMAND = \"" pylmmcmd "\"\n" )) + ; (("^GENENETWORK_FILES +=.*") (string-append "GENENETWORK_FILES = \"" datafiles "\"\n" )) + ; (("^PYLMM_COMMAND =.*") (string-append "PYLMM_COMMAND = \"" pylmmcmd "\"\n" )) (("^PLINK_COMMAND =.*") (string-append "PLINK_COMMAND = \"" plink2cmd "\"\n" )) (("^GEMMA_COMMAND =.*") (string-append "GEMMA_COMMAND = \"" gemmacmd "\"\n" )) ) |