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author | Efraim Flashner | 2022-02-14 12:15:21 +0200 |
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committer | Efraim Flashner | 2022-02-14 12:16:54 +0200 |
commit | a23571b9016a3d89de7f37ae92217b7b3c016ae7 (patch) | |
tree | 29515cd7080828530901840dd4ed6d046da1836f /gn | |
parent | 8bf29eff772fbc939b4802b6b64b35da925caa3b (diff) | |
download | guix-bioinformatics-a23571b9016a3d89de7f37ae92217b7b3c016ae7.tar.gz |
gn: Upstream 2 julia packages
Diffstat (limited to 'gn')
-rw-r--r-- | gn/packages/julia.scm | 92 |
1 files changed, 0 insertions, 92 deletions
diff --git a/gn/packages/julia.scm b/gn/packages/julia.scm index 34a7a35..6dddd4b 100644 --- a/gn/packages/julia.scm +++ b/gn/packages/julia.scm @@ -303,54 +303,6 @@ properties @end enumerate") (license license:expat))) -;; ready to upstream -(define-public julia-optim - (package - (name "julia-optim") - (version "1.6.0") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/JuliaNLSolvers/Optim.jl") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0nvl3xp9c6r80y9n7fic4zyq2443apfmbcpnx0wvgkv4vsy08x5j")))) - (build-system julia-build-system) - (arguments - (list - #:phases - #~(modify-phases %standard-phases - (add-after 'unpack 'adjust-tests - (lambda _ - ;; TODO: Figure out why this test fails. - (substitute* "test/runtests.jl" - ((".*l_bfgs.*") ""))))))) - (propagated-inputs - (list julia-compat - julia-fillarrays - julia-forwarddiff - julia-linesearches - julia-nanmath - julia-nlsolversbase - julia-parameters - julia-positivefactorizations - julia-statsbase)) - (native-inputs - (list julia-linesearches - julia-measurements - julia-nlsolversbase - julia-optimtestproblems - julia-positivefactorizations - julia-recursivearraytools - julia-stablerngs)) - (home-page "https://github.com/JuliaNLSolvers/Optim.jl") - (synopsis "Optimization functions for Julia") - (description "@code{Optim.jl} is a package for univariate and multivariate -optimization of functions.") - (license license:expat))) - (define-public julia-plots (package (name "julia-plots") @@ -642,50 +594,6 @@ R's d-p-q-r functions for probability distributions. It is a wrapper around (license license:expat))) ;; ready to upstream -(define-public julia-linesearches - (package - (name "julia-linesearches") - (version "7.1.1") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/JuliaNLSolvers/LineSearches.jl") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "1qc4la07w6s1xhcyd0hvbnpr31zc1a2ssgyybc8biv5m00g0dnr0")))) - (build-system julia-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'link-depot 'skip-optim-tests - (lambda _ - (substitute* "test/examples.jl" - ;; Prevent a cycle with Optim.jl. - (("^ SKIPFILE.*") "") - (("^ #SKIPFILE") " SKIPFILE")))) - (add-after 'link-depot 'skip-doublefloats-tests - (lambda _ - (substitute* "test/runtests.jl" - (("using DoubleFloats.*") "") - ((".*arbitrary_precision\\.jl.*") ""))))))) - (propagated-inputs - (list julia-nlsolversbase - julia-nanmath - julia-parameters)) - (native-inputs - ;; DoubleFloats.jl transitively depends on TimeZones.jl, which is currently - ;; unpackageable due to its oversized Artifacts.toml. - (list ;julia-doublefloats - julia-optimtestproblems)) - (home-page "https://github.com/JuliaNLSolvers/LineSearches.jl") - (synopsis "Line search methods for optimization and root-finding") - (description "This package provides an interface to line search algorithms -implemented in Julia.") - (license license:expat))) - -;; ready to upstream (define-public julia-doublefloats (package (name "julia-doublefloats") |