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authorPjotr Prins2024-04-03 06:14:59 -0500
committerPjotr Prins2024-04-03 06:14:59 -0500
commit6303fe046b944a380704eb02144cca777fee689b (patch)
tree2fba0d38c08e9151a76f85f4332e1a94d378b36d /gn
parent65cb368fe12bd2604d6f36d5d50404ac58d08673 (diff)
downloadguix-bioinformatics-6303fe046b944a380704eb02144cca777fee689b.tar.gz
genenetwork3-stable: modify files that use R scripts
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/genenetwork.scm11
1 files changed, 8 insertions, 3 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 4ceac43..c404c53 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -348,7 +348,7 @@
(license license:agpl3+))))
(define-public genenetwork3-stable
- (let ((commit "8414f1d74f6b09205d3cfd09240c787323474626")
+ (let ((commit "d8203aaa523895fd8b1ff6cc124f2e8a53932a07")
(revision "1"))
(package
(inherit genenetwork3)
@@ -361,9 +361,14 @@
#~(modify-phases %standard-phases
(add-before 'build 'update-paths
(lambda _
- (substitute* "gn3/api/rqtl.py"
+ (for-each (lambda (fn)
+ (substitute* (string-append "gn3/" fn)
(("scripts/")
- (string-append #$output "/scripts/")))))
+ (string-append #$output "/scripts/"))))
+ '("api/rqtl.py"
+ "computations/wgcna.py"
+ "computations/ctl.py"
+ "api/general.py"))))
(add-before 'install 'install-scripts
(lambda _
(begin