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| author | Pjotr Prins | 2024-04-03 04:08:07 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2024-04-03 04:08:07 -0500 |
| commit | 5871a33c424510c9fad10a240d355dfb31b027e7 (patch) | |
| tree | cb50e866bb65f8ef5798b05b3e044bab549f9e00 /gn | |
| parent | 4bce9fa4e3ebc3036ec94207b392d0c5b5d869d1 (diff) | |
| download | guix-bioinformatics-5871a33c424510c9fad10a240d355dfb31b027e7.tar.gz | |
genenetwork3-stable: patch path to R script
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/genenetwork.scm | 10 |
1 files changed, 8 insertions, 2 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index 2053e78..a0c8a57 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -348,7 +348,7 @@ (license license:agpl3+)))) (define-public genenetwork3-stable - (let ((commit "c094d2db352a39cc001b21ad4195fc32de24c863") + (let ((commit "8414f1d74f6b09205d3cfd09240c787323474626") (revision "1")) (package (inherit genenetwork3) @@ -356,7 +356,13 @@ (version (string-append "stable-" (git-version "3.11" revision commit))) (arguments (list - #:tests? #f)) ; temporary disable on production setup + #:phases + #~(modify-phases %standard-phases + (add-before 'build 'update-paths + (lambda _ + (substitute* "gn3/api/rqtl.py" + (("scripts/rqtl_wrapper.R)" + (string-append #$output "/scripts/rqtl_wrapper.R")))))))) (source (git-checkout (url "https://github.com/genenetwork/genenetwork3") |