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| author | Arun Isaac | 2024-01-03 00:33:25 +0000 |
|---|---|---|
| committer | Arun Isaac | 2024-01-03 00:33:25 +0000 |
| commit | 250f5bb11be7596d77cb8993afb3cc7e741530d3 (patch) | |
| tree | 41c09228f7d2bfe933234898430a8f20e48c743e /gn | |
| parent | 4ba4df365b6c5764c90e3ff939648f11110e04e5 (diff) | |
| download | guix-bioinformatics-250f5bb11be7596d77cb8993afb3cc7e741530d3.tar.gz | |
gn: genenetwork2: Update to 3.11-4.c1d377e.
* gn/packages/genenetwork.scm (genenetwork2): Update to
3.11-4.c1d377e.
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/genenetwork.scm | 27 |
1 files changed, 13 insertions, 14 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index ec0426b..1ad63c0 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -186,10 +186,11 @@ (license license:agpl3+)))) (define-public genenetwork2 - (let ((commit "ff679636d3ee9ae2388fab3fe5d091ef2f00a8e3")) + (let ((commit "c1d377ec86b902f76e47fc4506a9ff260d788082") + (revision "4")) (package (name "genenetwork2") - (version (git-version "3.11" "3" commit)) + (version (git-version "3.11" revision commit)) (source (origin (method git-fetch) (uri (git-reference @@ -198,7 +199,7 @@ (file-name (string-append name "-" version)) (sha256 (base32 - "0ap7q7v42c5sg4kjy76zdn6h6w5a3f534i5644rya5a1akmss7hg")))) + "03l01nr0pg52pdnc6sajnsvylw61j68x6zz6mi5ygkimbj4093sa")))) (native-inputs (list graphviz)) (propagated-inputs @@ -305,19 +306,17 @@ #:phases #~(modify-phases %standard-phases (delete 'reset-gzip-timestamps) - (add-after 'install 'install-bundled-fonts - (lambda _ - ;; Install bundled fonts. - (for-each (lambda (font-file) - (install-file font-file (string-append #$output "/share/fonts/"))) - (find-files "gn2/wqflask/static/fonts" - "\\.ttf$")))) - (add-after 'unpack 'fix-font-paths - (lambda _ - ;; Set absolute store paths to installed bundled fonts. + (add-after 'unpack 'fix-paths-to-static-files + (lambda* (#:key inputs outputs #:allow-other-keys) + ;; Set absolute store paths to installed static files. (substitute* "gn2/wqflask/marker_regression/display_mapping_results.py" (("\\./gn2/wqflask/static/fonts") - (string-append #$output "/share/fonts"))))) + (string-append (site-packages inputs outputs) + "/gn2/wqflask/static/fonts"))) + (substitute* "gn2/wqflask/views.py" + (("\\./gn2/wqflask/static/gif/error") + (string-append (site-packages inputs outputs) + "/gn2/wqflask/static/gif/error"))))) (add-after 'unpack 'fix-paths-scripts (lambda _ (substitute* "bin/genenetwork2" |