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| author | Arun Isaac | 2022-01-26 18:45:25 +0530 |
|---|---|---|
| committer | Arun Isaac | 2022-01-26 18:45:25 +0530 |
| commit | 94f6951f33dd801d30afcd9e547498345a7f1f1d (patch) | |
| tree | db9c806d507cb3f5ac02176e2e6bacd24b3950a4 /gn | |
| parent | b0afc47bd2be6374b45a9ab69dc22afc90985147 (diff) | |
| download | guix-bioinformatics-94f6951f33dd801d30afcd9e547498345a7f1f1d.tar.gz | |
gn: genenetwork: Disable tests on python-seaborn.
* gn/packages/genenetwork.scm (python-seaborn-without-tests, python-pingouin-with-working-python-seaborn): New variables. (genenetwork3)[propagated-inputs]: Replace python-pingouin with python-pingouin-with-working-python-seaborn.
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/genenetwork.scm | 17 |
1 files changed, 16 insertions, 1 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index e6633de..69ba99e 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -98,6 +98,21 @@ (description "Reimplementation of genenetwork/QTLReaper in Rust") (license #f)))) +;; Tests on the upstream python-seaborn package are broken. So, we +;; create this temporary workaround. +(define python-seaborn-without-tests + (package + (inherit python-seaborn) + (arguments + (substitute-keyword-arguments (package-arguments python-seaborn) + ((#:tests? _ #f) #f))))) + +(define python-pingouin-with-working-python-seaborn + (package + (inherit python-pingouin) + (propagated-inputs + `(("python-seaborn" ,python-seaborn-without-tests) + ,@(alist-delete "python-seaborn" (package-propagated-inputs python-pingouin)))))) (define-public genenetwork3 (let ((commit "784447b17d85a618005ac9acfc57f5b7ef8f5169")) @@ -129,7 +144,7 @@ ("python-mysqlclient" ,python-mysqlclient) ("python-numpy" ,python-numpy) ("python-pandas" ,python-pandas) - ("python-pingouin" ,python-pingouin) + ("python-pingouin" ,python-pingouin-with-working-python-seaborn) ("python-plotly" ,python-plotly) ("python-pylint" ,python-pylint) ("python-redis" ,python-redis) |