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authorEfraim Flashner2019-07-19 08:36:14 -0500
committerEfraim Flashner2019-07-21 02:45:30 -0500
commitaa118d1fdce888241f9d5e6414bc08bcf21b87f4 (patch)
tree07e0fecbcc095093347e051426b35427c0ea022d /gn
parentb4b6b3e9454be58a54343ead062bfb9a421481aa (diff)
downloadguix-bioinformatics-aa118d1fdce888241f9d5e6414bc08bcf21b87f4.tar.gz
gn: javascript-cytoscape: Update to 3.8.1.
* gn/packages/javascript.scm (javascript-cytoscape): Update to 3.8.1. [source]: Download using git-fetch. [native-inputs]: Remove gzip, tar. [arguments]: Change build script accordingly. [home-page]: Update home-page. [synopsis]: Update synopsis. [description]: Flesh out description.
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/javascript.scm41
1 files changed, 21 insertions, 20 deletions
diff --git a/gn/packages/javascript.scm b/gn/packages/javascript.scm
index 597049e..5399087 100644
--- a/gn/packages/javascript.scm
+++ b/gn/packages/javascript.scm
@@ -50,38 +50,39 @@ using JavaScript, without using new Twitter 1.1 API.")
(define-public javascript-cytoscape
(package
(name "javascript-cytoscape")
- (version "2.7.8") ; ancient version
+ (version "3.8.1") ; July 9, 2019
(source
(origin
- (method url-fetch)
- (uri (string-append "https://github.com/cytoscape/cytoscape.js/archive/v" version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/cytoscape/cytoscape.js")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
(sha256
- (base32 "08ks2nd7ccmdmahn151i180pvhn4vdzgpw99g4g4f2baz9pkz4w3"))))
+ (base32
+ "1dnwvmghwq21g9ag5cj49l0wnyfc54kbsrj0byii5wbwljjg9826"))))
(build-system trivial-build-system)
- (native-inputs `(("gzip" ,gzip)
- ("tar" ,tar)
- ("source" ,source)))
(arguments
`(#:modules ((guix build utils))
#:builder
(begin
(use-modules (guix build utils))
(let* ((out (assoc-ref %outputs "out"))
- (tarcmd (string-append (assoc-ref %build-inputs "tar") "/bin/tar"))
(targetdir (string-append out "/share/genenetwork2/javascript/cytoscape"))
- (source (assoc-ref %build-inputs "source")))
- (setenv "PATH" (string-append
- (assoc-ref %build-inputs "tar") "/bin" ":"
- (assoc-ref %build-inputs "gzip") "/bin"))
- (invoke "tar" "xvf" (assoc-ref %build-inputs "source") "--strip-components=1")
- (mkdir-p targetdir)
- (copy-recursively "dist" targetdir)
- ))))
+ (source (assoc-ref %build-inputs "source"))
+ (dist (string-append source "/dist")))
+ (copy-recursively dist targetdir)))))
+ (native-inputs `(("source" ,source)))
+ (home-page "https://js.cytoscape.org/")
+ (synopsis "Graph theory (network) library for visualisation and analysis")
+ (description "Cytoscape.js is a fully featured graph theory library. Do you
+need to model and/or visualise relational data, like biological data or social
+networks? If so, Cytoscape.js is just what you need.
- (home-page "https://github.com/cytoscape/cytoscape.js")
- (synopsis "Cytoscape.js")
- (description "Cytoscape.")
+Cytoscape.js contains a graph theory model and an optional renderer to display
+interactive graphs. This library was designed to make it as easy as possible
+for programmers and scientists to use graph theory in their apps, whether it's
+for server-side analysis in a Node.js app or for a rich user interface.")
(license license:expat)))
(define-public javascript-cytoscape-panzoom