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authorpjotrp2018-07-14 10:43:53 +0000
committerpjotrp2018-07-14 10:43:53 +0000
commit99718d253ec9ed8ed836f0a348381a7cd83d4b9f (patch)
tree722a7c77e26ad390d0a6432174e89fe1526559a9 /gn
parentf7a4bbf655bb255df46228f04cc191c1f08f198b (diff)
downloadguix-bioinformatics-99718d253ec9ed8ed836f0a348381a7cd83d4b9f.tar.gz
Update dependencies for building gemma
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/gemma.scm16
1 files changed, 14 insertions, 2 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm
index 973a077..e3a03c6 100644
--- a/gn/packages/gemma.scm
+++ b/gn/packages/gemma.scm
@@ -31,6 +31,7 @@
#:use-module (gnu packages file)
#:use-module (gnu packages gawk)
#:use-module (gnu packages gcc)
+ #:use-module (gnu packages gdb)
#:use-module (gnu packages graphviz)
#:use-module (gnu packages java)
#:use-module (gnu packages ldc)
@@ -334,8 +335,19 @@ association studies (GWAS).")
("source" ,source)))
(inputs `(("sassc" ,sassc)))
(propagated-inputs
- `(("gemma-wrapper" ,gemma-wrapper)
- ;; ("gcc" ,gcc-8)
+ `(("binutils" ,binutils) ; for ld
+ ("gemma-gn2" ,gemma-gn2-git)
+ ; ("gemma-wrapper" ,gemma-wrapper)
+ ("gcc" ,gcc-7)
+ ("gdb" ,gdb)
+ ("gfortran:lib" ,gfortran "lib")
+ ("glibc" ,glibc) ; for crt1.o
+ ("gsl" ,gsl)
+ ("eigen" ,eigen)
+ ("linux-libre-headers" ,linux-libre-headers)
+ ("openblas" ,openblas-git)
+ ("shunit2" ,shunit2)
+ ("zlib" ,zlib)
))
(arguments
`(#:modules ((guix build utils))