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authorEfraim Flashner2019-08-05 04:43:44 -0500
committerEfraim Flashner2019-08-05 04:43:44 -0500
commit1de344e71b1dd972e7ef69df2535f7464db9151a (patch)
treed6c597f6dfa87affe62b1c9256c8b421f08bb7eb /gn
parent50319950fa33913fb8217d019cc7bd67bab4ad0d (diff)
downloadguix-bioinformatics-1de344e71b1dd972e7ef69df2535f7464db9151a.tar.gz
gn: pindel: Don't use unstable tarball.
* gn/packages/bioinformatics.scm (pindel)[source]: Download using 'git-fetch'.
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/bioinformatics.scm11
1 files changed, 6 insertions, 5 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 0c88442..5b77fb1 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -939,12 +939,13 @@ manipulations on VCF files.")
(name "pindel")
(version "0.2.5b8")
(source (origin
- (method url-fetch)
- (uri (string-append "https://github.com/genome/pindel/archive/v"
- version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/genome/pindel.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
(sha256
- (base32 "06bsf0psxwf7h5p3j97xkh9k5qrwhxh6xn942y1j1m2inyhgs8bz"))))
+ (base32 "16a32fbgv1n58nfcxa1nyphrdrad80sgpinfa9p028n6plwycpww"))))
(build-system gnu-build-system)
(inputs
`(("samtools" ,samtools)