diff options
| author | Roel Janssen | 2016-03-01 13:48:46 +0100 |
|---|---|---|
| committer | Roel Janssen | 2016-03-01 13:48:46 +0100 |
| commit | 66fc6e38aa7326b49fb79790ba885ab77205b742 (patch) | |
| tree | 2146362f05548ee0071b1df456100b462f7954d6 /gn | |
| parent | 8dba0e74b31d02cf42fee9b9d93d1a3070cc0b24 (diff) | |
| download | guix-bioinformatics-66fc6e38aa7326b49fb79790ba885ab77205b742.tar.gz | |
Changed Sambamba source.
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 14 |
1 files changed, 9 insertions, 5 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index ffa28ae..12a4bcb 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -470,19 +470,22 @@ association studies (GWAS).") (license license:gpl3)))) (define-public sambamba - (let ((commit "2ca5a2dbac5ab90c3b4c588519edc3edcb71df84")) + (let ((commit "c810c7ef14957f16288c205fd7b9d25c4ae7005d")) + ;;(let ((commit "2ca5a2dbac5ab90c3b4c588519edc3edcb71df84")) (package (name "sambamba") (version (string-append "0.5.9-1." (string-take commit 7))) (source (origin (method git-fetch) - (uri (git-reference - (url "https://github.com/pjotrp/sambamba.git") + (uri (git-reference + (url "https://github.com/roelj/sambamba.git") + ;;(url "https://github.com/pjotrp/sambamba.git") (commit commit))) (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "1f14wn9aaxwjkmla6pzq3s28741carbr2v0fd2v2mm1dcpwnrqz5")))) + "0c4c13f021sl7mf5xc2v8dbwsz775n8dlsrrn7qa6qgbx05n54dv")))) + ;;"1f14wn9aaxwjkmla6pzq3s28741carbr2v0fd2v2mm1dcpwnrqz5")))) (build-system gnu-build-system) (native-inputs `(("ldc" ,ldc) @@ -500,6 +503,7 @@ association studies (GWAS).") "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5" ".tar.gz")) ;;(uri "https://github.com/samtools/htslib/archive/1.3.tar.gz") (file-name "htslib-2f3c3ea7b.tar.gz") + ;;(file-name "htslib-1.3.tar.gz") (sha256 (base32 "0bl6w856afnbgdsw8bybsxpqsyf2ba3f12rqh47hhpxvv866g08w")))) ;;(base32 "1bqkif7yrqmiqak5yb74kgpb2lsdlg7y344qa1xkdg7k1l4m86i9")) @@ -535,7 +539,7 @@ association studies (GWAS).") 'build (lambda* (#:key inputs make-flags #:allow-other-keys) (zero? (system* "make" "-f" "Makefile.guix" - (string-append "LDC_LIB_PATH=" + (string-append "LDC_LIB_PATH=" (assoc-ref inputs "ldc") "/lib"))))) (replace |