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author | Pjotr Prins | 2016-04-05 12:58:33 +0200 |
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committer | Pjotr Prins | 2016-04-05 12:58:33 +0200 |
commit | b11617ca00b2bd6b875770076141352accf65551 (patch) | |
tree | 91d8985858a226d8314d33bbaf6216bb9bde66c3 /gn | |
parent | 5c2bfdbf325d5fa6b3479435ff05f6bb41387ef7 (diff) | |
parent | 3002054c737b6328fc71ab7663986e1dd861f314 (diff) | |
download | guix-bioinformatics-b11617ca00b2bd6b875770076141352accf65551.tar.gz |
Merge pull request #12 from roelj/master
gn: Add sparql-query.
Diffstat (limited to 'gn')
-rw-r--r-- | gn/packages/sparql-query.scm | 87 |
1 files changed, 87 insertions, 0 deletions
diff --git a/gn/packages/sparql-query.scm b/gn/packages/sparql-query.scm new file mode 100644 index 0000000..dd6f553 --- /dev/null +++ b/gn/packages/sparql-query.scm @@ -0,0 +1,87 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2016 Roel Janssen <roel@gnu.org> +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. + +(define-module (gn packages sparql-query) + #:use-module ((guix licenses) #:prefix license:) + #:use-module (guix packages) + #:use-module (guix utils) + #:use-module (guix download) + #:use-module (guix build-system gnu) + #:use-module (gnu packages) + #:use-module (gnu packages compression) + #:use-module (gnu packages curl) + #:use-module (gnu packages glib) + #:use-module (gnu packages readline) + #:use-module (gnu packages ncurses) + #:use-module (gnu packages pkg-config) + #:use-module (gnu packages xml)) + +(define-public sparql-query + (package + (name "sparql-query") + (version "1.1") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/tialaramex/sparql-query/archive/" + version ".tar.gz")) + (sha256 + (base32 "0yq3k20472rv8npcc420q9ab6idy584g5y0q501d360k5q0ggr8w")) + (file-name (string-append name "-" version ".tar.gz")))) + (build-system gnu-build-system) + (inputs + `(("readline" ,readline) + ("ncurses" ,ncurses) + ("glib" ,glib) + ("libxml2" ,libxml2) + ("curl" ,curl))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (arguments + `(#:tests? #t + #:make-flags '("CC=gcc") + #:phases + (modify-phases %standard-phases + (delete 'configure) + (add-after 'unpack 'remove-git-dependency + (lambda _ + (substitute* "Makefile" + (("^gitrev :=.*$") "gitrev = \"v1.0-3-gb015131\"")))) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin"))) + (install-file "sparql-query" bin) + (system* "ln" "--symbolic" + (string-append bin "/sparql-query") + (string-append bin "/sparql-update"))))) + (replace 'check + (lambda _ + (and + ;; The make-flags seem to get ignored here. + (zero? (system* "make" "CC=gcc" "scan-test")) + (zero? (system* "./scan-test")))))))) + (home-page "https://github.com/tialaramex/sparql-query/") + (synopsis "Command-line tool for accessing SPARQL endpoints over HTTP") + (description "sparql-query is a command-line tool for accessing SPARQL +endpoints over HTTP. It has been intentionally designed to 'feel' similar to +tools for interrogating SQL databases. For example, you can enter a query over +several lines, using a semi-colon at the end of a line to indicate the end of +your query. It also supports readline so that you can more easily recall and +edit previous queries, even across sessions. It can be used non-interactively, +for example from a shell script.") + (license license:gpl2+))) |