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authorpjotrp2016-12-11 07:50:54 +0000
committerpjotrp2016-12-11 07:50:54 +0000
commit93882785222202358ae73b9b01b951a563445fcf (patch)
tree7de1c89b2f97ab96c2b2acf789596140490093ce /gn
parent02c85bfe87c35a715cd95fc13c0f7b258c97fb44 (diff)
downloadguix-bioinformatics-93882785222202358ae73b9b01b951a563445fcf.tar.gz
pocl: remove pocl for the time being - it confuses things
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/pocl.scm307
1 files changed, 0 insertions, 307 deletions
diff --git a/gn/packages/pocl.scm b/gn/packages/pocl.scm
deleted file mode 100644
index ad3417e..0000000
--- a/gn/packages/pocl.scm
+++ /dev/null
@@ -1,307 +0,0 @@
-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2016 Dennis Mungai <dmngaie@gmail.com>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
-
-(define-module (gn packages pocl)
-  #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix git-download)
-  #:use-module (guix download)
-  #:use-module (guix utils)
-  #:use-module (guix build-system gnu)
-  #:use-module (guix build-system cmake)
-  #:use-module (guix packages)
-  #:use-module (gnu packages)
-  #:use-module (srfi srfi-1)
-  #:use-module (gnu packages algebra)
-  #:use-module (gnu packages autotools)
-  #:use-module (gnu packages curl)
-  #:use-module (gnu packages boost)
-  #:use-module (gnu packages bootstrap)
-  #:use-module (gnu packages base)
-  #:use-module (gnu packages gawk)
-  #:use-module (gnu packages cmake)
-  #:use-module (gnu packages gcc)
-  #:use-module (gnu packages glib)
-  #:use-module (gnu packages image)
-  #:use-module (gnu packages video)
-  #:use-module (gnu packages textutils)
-  #:use-module (gnu packages gl)
-  #:use-module (gnu packages llvm)
-  #:use-module (gnu packages pkg-config)
-  #:use-module (gnu packages maths)
-  #:use-module (gnu packages mpi)
-  #:use-module (gnu packages web)
-  #:use-module (gnu packages perl)
-  #:use-module (gnu packages python)
-  #:use-module (gnu packages xorg)
-  #:use-module (gnu packages xml)
-  #:use-module (gnu packages version-control)
-  #:use-module (gnu packages ruby)
-  #:use-module (gnu packages gnupg)
-  #:use-module ((gnu packages zip) #:prefix gnuzip:)
-  #:use-module (gnu packages linux))
-
-(define-public pocl
-(let ((commit "7aefc52"))
-  (package
-    (name "pocl")
-    (version (string-append "v09rc-" commit ))
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-              (url "https://github.com/pocl/pocl.git")
-              (commit commit)))
-              (file-name (string-append name "-" commit))
-              (sha256
-               (base32
-                "03wbcxkx1w5kx0crangsnah0xq218bhb99vglmn00wcjhhw80qim"))))
-(native-inputs `(("autoconf" ,autoconf)
-                ("automake" ,automake)
-                ("libtool" ,libtool)
-                ("cmake" ,cmake)
-                ("pkg-config" ,pkg-config)))
-(inputs        `(("python" ,python-2)
-               ("boost" ,boost)
-               ("dbus" ,dbus)
-               ("clang" ,clang-3.7.1)
-               ("clang-runtime" ,clang-runtime-3.7.1)
-               ("enca" ,enca)
-               ("eudev" ,eudev)
-               ("fftw-openmpi" ,fftw-openmpi)
-               ("glew" ,glew)
-               ("hwloc" ,hwloc)
-               ("libcap" ,libcap)
-               ("libjpeg" ,libjpeg)
-               ("libltdl" ,libltdl)
-               ("libtiff" ,libtiff)
-               ("llvm" ,llvm-3.7.1)
-               ("ocl-icd" ,ocl-icd)
-               ("opencl-headers" ,opencl-headers)
-               ("mesa-utils" ,mesa-utils)
-               ("openmpi" ,openmpi)
-               ("perl" ,perl)
-               ("randrproto" ,randrproto)
-               ("libxrandr" ,libxrandr)
-               ("xineramaproto" ,xineramaproto)
-               ("libxinerama" ,libxinerama)
-               ("libxcursor" ,libxcursor)
-               ("fftw-openmpi" ,fftw-openmpi)))
-    (build-system gnu-build-system)
-    (arguments
-     `(#:configure-flags '("--enable-icd")
-     #:tests? #f
-       #:phases
-       (modify-phases %standard-phases
-         (add-before
-          'configure 'rewrite-usr-bin
-          (lambda _
-                   (zero? (system* "./autogen.sh")))))))                
-    (synopsis "pocl: Portable Computing Language (pocl) aims to become a MIT-licensed
-     open source implementation of the OpenCL standard which can be easily adapted for
-     new targets and devices, both for homogeneous CPU and heterogenous GPUs/accelerators.")
-    (description "Portable Computing Language (pocl) aims to become a MIT-licensed
-     open source implementation of the OpenCL standard which can be easily adapted for
-     new targets and devices, both for homogeneous CPU and heterogenous GPUs/accelerators.")
-    (home-page "http://portablecl.org/")
-    (license license:gpl2))))
-        
-(define-public ocl-icd
-  (package
-   (name "ocl-icd")
-   (version "2.2.9")
-   (source (origin
-             (method url-fetch)
-             (uri (string-append "https://forge.imag.fr/frs/download.php/716/ocl-icd-"
-                                 version ".tar.gz"))
-             (file-name (string-append name "-" version ".tar.gz"))
-             (sha256
-              (base32
-               "1rgaixwnxmrq2aq4kcdvs0yx7i6krakarya9vqs7qwsv5hzc32hc"))))
-    (inputs `(("zip" ,gnuzip:zip)
-             ("autoconf" ,autoconf)
-             ("automake" ,automake)
-             ("ruby" ,ruby)
-             ("libtool" ,libtool)
-             ("opencl-headers" ,opencl-headers)
-             ("libgcrypt" ,libgcrypt)))                                              
-    (build-system gnu-build-system)
-     (arguments
-     '(#:phases (modify-phases %standard-phases
-                    (add-after 'unpack `bootstrap
-                      (lambda _
-                        (zero? (system* "autoreconf" "-vfi")))))))    
-    (home-page "https://forge.imag.fr/projects/ocl-icd/")
-    (synopsis "OpenCL implementations are provided as ICD (Installable Client Driver).")
-    (description "OpenCL implementations are provided as ICD (Installable Client Driver).
-    An OpenCL program can use several ICD thanks to the use of an ICD Loader as provided by this project.
-    This free ICD Loader can load any (free or non free) ICD")
-    (license license:gpl2)))
-    
- (define-public opencl-headers
-(let ((commit "c1770dc"))
-  (package
-    (name "opencl-headers")
-    (version (string-append "2.1-" commit ))
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-              (url "https://github.com/KhronosGroup/OpenCL-Headers.git")
-              (commit commit)))
-              (file-name (string-append name "-" commit))
-              (sha256
-               (base32
-                "0m9fkblqja0686i2jjqiszvq3df95gp01a2674xknlmkd6525rck"))))
-    (propagated-inputs '())
-    (inputs '())
-    (native-inputs '())
-    (build-system gnu-build-system)
-    (arguments
-     '(#:phases
-       (modify-phases %standard-phases
-         (delete 'configure)
-         (delete 'build)
-         (delete 'check)
-         (replace 'install
-                  (lambda* (#:key outputs #:allow-other-keys)
-                    (copy-recursively "." (string-append
-                                                 (assoc-ref outputs "out")
-                                                 "/include/CL")))))))
-    (synopsis "The Khronos OpenCL headers")
-    (description "This package provides the Khronos OpenCL headers")
-    (home-page "https://www.khronos.org/registry/cl/")
-    (license license:gpl2))))
-    
-(define (clang-runtime-from-llvm llvm hash)
-  (package
-    (name "clang-runtime")
-    (version (package-version llvm-3.7.1))
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "http://llvm.org/releases/"
-                           version "/compiler-rt-" version ".src.tar.xz"))
-       (sha256 
-        (base32 
-        "10c1mz2q4bdq9bqfgr3dirc6hz1h3sq8573srd5q5lr7m7j6jiwx"))))
-    (build-system cmake-build-system)
-    (native-inputs (package-native-inputs llvm))
-    (inputs
-     `(("llvm" ,llvm)))
-    (arguments
-     `(;; Don't use '-g' during the build to save space.
-       #:build-type "Release"))
-
-    (home-page "http://compiler-rt.llvm.org")
-    (synopsis "Runtime library for Clang/LLVM")
-    (description
-     "The \"clang-runtime\" library provides the implementations of run-time
-functions for C and C++ programs.  It also provides header files that allow C
-and C++ source code to interface with the \"sanitization\" passes of the clang
-compiler.  In LLVM this library is called \"compiler-rt\".")
-    (license license:ncsa)
-
-    ;; <http://compiler-rt.llvm.org/> doesn't list MIPS as supported.
-    (supported-systems (delete "mips64el-linux" %supported-systems))))
-
-(define (clang-from-llvm llvm clang-runtime hash)
-  (package
-    (name "clang")
-    (version (package-version llvm-3.7.1))
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "http://llvm.org/releases/"
-                           version "/cfe-" version ".src.tar.xz"))
-       (sha256 
-        (base32 
-         "0x065d0w9b51xvdjxwfzjxng0gzpbx45fgiaxpap45ragi61dqjn"))
-       (patches (list (search-patch "clang-libc-search-path.patch")))))
-    ;; Using cmake allows us to treat llvm as an external library.  There
-    ;; doesn't seem to be any way to do this with clang's autotools-based
-    ;; build system.
-    (build-system cmake-build-system)
-    (native-inputs (package-native-inputs llvm))
-    (inputs
-     `(("libxml2" ,libxml2)
-       ("libstdc++-4.9", libstdc++-4.9)
-       ("python" ,python-2)
-       ("gcc-lib" ,gcc "lib")
-       ,@(package-inputs llvm)))
-    (propagated-inputs
-     `(("llvm" ,llvm)
-       ("clang-runtime" ,clang-runtime)))
-    (arguments
-     `(#:configure-flags
-       (list "-DCLANG_INCLUDE_TESTS=True"
-
-             ;; Find libgcc_s, crtbegin.o, and crtend.o.
-             (string-append "-DGCC_INSTALL_PREFIX="
-                            (assoc-ref %build-inputs "gcc-lib"))
-
-             ;; Use a sane default include directory.
-             (string-append "-DC_INCLUDE_DIRS="
-                            (assoc-ref %build-inputs "libc")
-                            "/include"))
-
-       ;; Don't use '-g' during the build to save space.
-       #:build-type "Release"
-
-       #:phases (modify-phases %standard-phases
-                  (add-after
-                   'unpack 'set-glibc-file-names
-                   (lambda* (#:key inputs #:allow-other-keys)
-                     (let ((libc (assoc-ref inputs "libc"))
-                           (compiler-rt (assoc-ref inputs "clang-runtime")))
-                       (substitute* "lib/Driver/Tools.cpp"
-                         ;; Patch the 'getLinuxDynamicLinker' function to that
-                         ;; it uses the right dynamic linker file name.
-                         (("/lib64/ld-linux-x86-64.so.2")
-                          (string-append libc
-                                         ,(glibc-dynamic-linker)))
-
-                         ;; Link to libclang_rt files from clang-runtime.
-                         (("TC\\.getDriver\\(\\)\\.ResourceDir")
-                          (string-append "\"" compiler-rt "\"")))
-
-                       ;; Same for libc's libdir, to allow crt1.o & co. to be
-                       ;; found.
-                       (substitute* "lib/Driver/ToolChains.cpp"
-                         (("@GLIBC_LIBDIR@")
-                          (string-append libc "/lib")))))))))
-
-    ;; Clang supports the same environment variables as GCC.
-    (native-search-paths
-     (list (search-path-specification
-            (variable "CPATH")
-            (files '("include")))
-           (search-path-specification
-            (variable "LIBRARY_PATH")
-            (files '("lib" "lib64")))))
-
-    (home-page "http://clang.llvm.org")
-    (synopsis "C language family frontend for LLVM")
-    (description
-     "Clang is a compiler front end for the C, C++, Objective-C and
-Objective-C++ programming languages.  It uses LLVM as its back end.  The Clang
-project includes the Clang front end, the Clang static analyzer, and several
-code analysis tools.")
-    (license license:ncsa)))
-         
-
-
-    
-